Tomato Functional Genomics Database (TFGD)

Tomato miRNA M00202

sequence	Length	miRNA family	sRNA ID	target
AGGGAUUGUAGGCAGAGAGAUGGC	24	NA	S07846781	NA

Digital expression

Sample				No. raw reads	RPM
ID	Organism	Cultivar	Tissue	No. raw reads	RPM
S0739	Solanum lycopersicum	Ailsa Craig	fruit, red ripe (52 days after anthesis)	188	18.32
S0738	Solanum lycopersicum	Ailsa Craig	fruit, breaker (42 days after anthesis)	94	12.46
S0737	Solanum lycopersicum	Ailsa Craig	fruit, mature green (39 days after anthesis)	32	3.74
S0736	Solanum lycopersicum	Ailsa Craig	fruit, immature (17 days after anthesis)	294	63.31
S0735	Solanum lycopersicum	Sunny	leaf , TSWV-infected	3519	259.56
S0734	Solanum lycopersicum	IL8-3-1	seedlings, two-week-old	12644	9743.65
S0733	Solanum lycopersicum	IL8-3	seedlings, two-week-old	1875	1422.39
S0732	Solanum lycopersicum	IL8-2-1	seedlings, two-week-old	6507	4635.82
S0731	Solanum lycopersicum	IL8-2	seedlings, two-week-old	10817	7966.47
S0730	Solanum lycopersicum	IL8-1-3	seedlings, two-week-old	9286	5798.24
S0729	Solanum lycopersicum	IL8-1D	seedlings, two-week-old	4531	2886.44
S0728	Solanum lycopersicum	IL8-1-1	seedlings, two-week-old	5440	3585.23
S0727	Solanum lycopersicum	IL2-5	seedlings, two-week-old	10324	6311.55
S0726	Solanum lycopersicum	IL1-1	seedlings, two-week-old	10887	6517.1
S0725	Solanum lycopersicum x S. pennellii	M82 x LA716 (F2)	seedlings, two-week-old , replicate3	1395	1361.1
S0724	Solanum lycopersicum x S. pennellii	M82 x LA716 (F2)	seedlings, two-week-old , replicate2	1881	1098.08
S0723	Solanum lycopersicum x S. pennellii	M82 x LA716 (F2)	seedlings, two-week-old , replicate1	943	925.02
S0722	Solanum lycopersicum x S. pennellii	M82 x LA716 (F1)	seedlings, two-week-old , replicate2	3959	2799.93
S0721	Solanum lycopersicum x S. pennellii	M82 x LA716 (F1)	seedlings, two-week-old , replicate1	5087	5537.72
S0720	Solanum pennellii	LA716	seedlings, two-week-old , replicate2	1550	1480.96
S0719	Solanum pennellii	LA716	seedlings, two-week-old , replicate1	827	2388.98
S0718	Solanum lycopersicum	M82	seedlings, two-week-old , replicate2	5499	3830.83
S0717	Solanum lycopersicum	M82	seedlings, two-week-old , replicate1	6333	8450.97
S0716	Solanum lycopersicum	MicroTom	fruit , 7 days post breaker	2362	987.7
S0715	Solanum lycopersicum	MicroTom	fruit , 5 days post breaker	3869	3956.25
S0714	Solanum lycopersicum	MicroTom	fruit , 3 days post breaker	4756	1197.11
S0713	Solanum lycopersicum	MicroTom	fruit , breaker stage	13857	3927.4
S0712	Solanum lycopersicum	MicroTom	fruit , mature green	7016	1794.97
S0711	Solanum lycopersicum	MicroTom	fruit , 11mm to 14mm in diameter	13333	6422.48
S0710	Solanum lycopersicum	MicroTom	fruit , 5mm to 7mm in diameter	22027	18298.7
S0709	Solanum lycopersicum	MicroTom	fruit , 1mm to 3mm in diameter	42482	24087.4
S0708	Solanum lycopersicum	MicroTom	flower, open	4730	1459.41
S0707	Solanum lycopersicum	MicroTom	flower bud, closed bud before flower blooming	11896	3123.02
S0373	Solanum lycopersicum	Heinz 1706	fruit	103	30.83
S0372	Solanum lycopersicum	Heinz 1706	flower	42	12.71
S0371	Solanum lycopersicum	Heinz 1706	leaf	61	18.38

Hits on known miRNAs

No hits on known miRNAs were found

Precursor of miRNA M00202

genome hit of precursor				precursor
sequence ID	start	end	strand	sequence	folding energy	miRNA*	structure
SL2.40ch02	45487028	45487199	+	GCCAUCUUCCUGGCUAUAUU CCCUUGUAAAGUGUCCCUCU UCGCCGCAUUUGUAGCAUCC CGCUAUUCCUCCACCGCCUC CCUGGCUACAUUCCCUUGCG AAAGAAGGAGGGGGCUGCUA CAAAUGUGGGGAAGAAGGGC AUUUUGGAAGGGAUUGUAGG CAGAGAGAUGGC	-101.70	NA	structure
SL2.40ch02	45483331	45483502	+	GCCAUCUUCCUGGCUAUAUU CCCUUGUAAAGUGUCCUUCU UGUCCGCAUUUGUAGCAUCC CGCUCCUCCUCCACCGCCUC CUUGGCUACAUUCCCUUGUG AAAGAAGGAAGGGGCUGCUA CAAAUGUGGGGAAGAAGGGC AUUUUGGAAGGGAUUGUAGG CAGAGAGAUGGC	-102.20	NA	structure