Tomato miRNA M00202

sequenceLengthmiRNA familysRNA IDtarget
AGGGAUUGUAGGCAGAGAGAUGGC24NA S07846781 NA

Digital expression

SampleNo. raw readsRPM
IDOrganismCultivarTissue
S0739Solanum lycopersicumAilsa Craigfruit, red ripe (52 days after anthesis)18818.32
S0738Solanum lycopersicumAilsa Craigfruit, breaker (42 days after anthesis)9412.46
S0737Solanum lycopersicumAilsa Craigfruit, mature green (39 days after anthesis)323.74
S0736Solanum lycopersicumAilsa Craigfruit, immature (17 days after anthesis)29463.31
S0735Solanum lycopersicumSunnyleaf , TSWV-infected3519259.56
S0734Solanum lycopersicumIL8-3-1seedlings, two-week-old 126449743.65
S0733Solanum lycopersicumIL8-3seedlings, two-week-old 18751422.39
S0732Solanum lycopersicumIL8-2-1seedlings, two-week-old 65074635.82
S0731Solanum lycopersicumIL8-2seedlings, two-week-old 108177966.47
S0730Solanum lycopersicumIL8-1-3seedlings, two-week-old 92865798.24
S0729Solanum lycopersicumIL8-1Dseedlings, two-week-old 45312886.44
S0728Solanum lycopersicumIL8-1-1seedlings, two-week-old 54403585.23
S0727Solanum lycopersicumIL2-5seedlings, two-week-old 103246311.55
S0726Solanum lycopersicumIL1-1seedlings, two-week-old 108876517.1
S0725Solanum lycopersicum x S. pennelliiM82 x LA716 (F2)seedlings, two-week-old , replicate313951361.1
S0724Solanum lycopersicum x S. pennelliiM82 x LA716 (F2)seedlings, two-week-old , replicate218811098.08
S0723Solanum lycopersicum x S. pennelliiM82 x LA716 (F2)seedlings, two-week-old , replicate1943925.02
S0722Solanum lycopersicum x S. pennelliiM82 x LA716 (F1)seedlings, two-week-old , replicate239592799.93
S0721Solanum lycopersicum x S. pennelliiM82 x LA716 (F1)seedlings, two-week-old , replicate150875537.72
S0720Solanum pennelliiLA716seedlings, two-week-old , replicate215501480.96
S0719Solanum pennelliiLA716seedlings, two-week-old , replicate18272388.98
S0718Solanum lycopersicumM82seedlings, two-week-old , replicate254993830.83
S0717Solanum lycopersicumM82seedlings, two-week-old , replicate163338450.97
S0716Solanum lycopersicumMicroTom fruit , 7 days post breaker2362987.7
S0715Solanum lycopersicumMicroTom fruit , 5 days post breaker38693956.25
S0714Solanum lycopersicumMicroTom fruit , 3 days post breaker47561197.11
S0713Solanum lycopersicumMicroTom fruit , breaker stage138573927.4
S0712Solanum lycopersicumMicroTom fruit , mature green70161794.97
S0711Solanum lycopersicumMicroTom fruit , 11mm to 14mm in diameter133336422.48
S0710Solanum lycopersicumMicroTom fruit , 5mm to 7mm in diameter2202718298.7
S0709Solanum lycopersicumMicroTom fruit , 1mm to 3mm in diameter4248224087.4
S0708Solanum lycopersicumMicroTom flower, open47301459.41
S0707Solanum lycopersicumMicroTom flower bud, closed bud before flower blooming118963123.02
S0373Solanum lycopersicumHeinz 1706fruit10330.83
S0372Solanum lycopersicumHeinz 1706flower4212.71
S0371Solanum lycopersicumHeinz 1706leaf6118.38

Hits on known miRNAs

No hits on known miRNAs were found

Precursor of miRNA M00202

genome hit of precursorprecursor
sequence IDstartendstrandsequence folding
energy
miRNA*structure
SL2.40ch024548702845487199+ GCCAUCUUCCUGGCUAUAUU
CCCUUGUAAAGUGUCCCUCU
UCGCCGCAUUUGUAGCAUCC
CGCUAUUCCUCCACCGCCUC
CCUGGCUACAUUCCCUUGCG
AAAGAAGGAGGGGGCUGCUA
CAAAUGUGGGGAAGAAGGGC
AUUUUGGAAGGGAUUGUAGG
CAGAGAGAUGGC
-101.70NA structure
SL2.40ch024548333145483502+ GCCAUCUUCCUGGCUAUAUU
CCCUUGUAAAGUGUCCUUCU
UGUCCGCAUUUGUAGCAUCC
CGCUCCUCCUCCACCGCCUC
CUUGGCUACAUUCCCUUGUG
AAAGAAGGAAGGGGCUGCUA
CAAAUGUGGGGAAGAAGGGC
AUUUUGGAAGGGAUUGUAGG
CAGAGAGAUGGC
-102.20NA structure