Tomato Functional Genomics Database (TFGD)

Tomato sRNA S17769336

Sequence	Length	annotation
GGACCAGGCUUCAUUCCCC	19	miRNA

expression

Sample				No. raw reads	RPM
ID	Organism	Cultivar	Tissue	No. raw reads	RPM
S0739	Solanum lycopersicum	Ailsa Craig	fruit, red ripe (52 days after anthesis)	13	1.27
S0738	Solanum lycopersicum	Ailsa Craig	fruit, breaker (42 days after anthesis)	9	1.19
S0737	Solanum lycopersicum	Ailsa Craig	fruit, mature green (39 days after anthesis)	51	5.96
S0736	Solanum lycopersicum	Ailsa Craig	fruit, immature (17 days after anthesis)	205	44.15
S0735	Solanum lycopersicum	Sunny	leaf , TSWV-infected	151	11.14
S0734	Solanum lycopersicum	IL8-3-1	seedlings, two-week-old	24	18.49
S0733	Solanum lycopersicum	IL8-3	seedlings, two-week-old	17	12.9
S0732	Solanum lycopersicum	IL8-2-1	seedlings, two-week-old	10	7.12
S0731	Solanum lycopersicum	IL8-2	seedlings, two-week-old	10	7.36
S0730	Solanum lycopersicum	IL8-1-3	seedlings, two-week-old	17	10.61
S0729	Solanum lycopersicum	IL8-1D	seedlings, two-week-old	36	22.93
S0728	Solanum lycopersicum	IL8-1-1	seedlings, two-week-old	17	11.2
S0727	Solanum lycopersicum	IL2-5	seedlings, two-week-old	37	22.62
S0726	Solanum lycopersicum	IL1-1	seedlings, two-week-old	24	14.37
S0725	Solanum lycopersicum x S. pennellii	M82 x LA716 (F2)	seedlings, two-week-old , replicate3	1	0.98
S0724	Solanum lycopersicum x S. pennellii	M82 x LA716 (F2)	seedlings, two-week-old , replicate2	8	4.67
S0723	Solanum lycopersicum x S. pennellii	M82 x LA716 (F2)	seedlings, two-week-old , replicate1	1	0.98
S0722	Solanum lycopersicum x S. pennellii	M82 x LA716 (F1)	seedlings, two-week-old , replicate2	1	0.71
S0721	Solanum lycopersicum x S. pennellii	M82 x LA716 (F1)	seedlings, two-week-old , replicate1	11	11.97
S0720	Solanum pennellii	LA716	seedlings, two-week-old , replicate2	7	6.69
S0719	Solanum pennellii	LA716	seedlings, two-week-old , replicate1	10	28.89
S0718	Solanum lycopersicum	M82	seedlings, two-week-old , replicate2	8	5.57
S0717	Solanum lycopersicum	M82	seedlings, two-week-old , replicate1	2	2.67
S0716	Solanum lycopersicum	MicroTom	fruit , 7 days post breaker	20	8.36
S0715	Solanum lycopersicum	MicroTom	fruit , 5 days post breaker	4	4.09
S0714	Solanum lycopersicum	MicroTom	fruit , 3 days post breaker	85	21.39
S0713	Solanum lycopersicum	MicroTom	fruit , breaker stage	13	3.68
S0712	Solanum lycopersicum	MicroTom	fruit , mature green	89	22.77
S0711	Solanum lycopersicum	MicroTom	fruit , 11mm to 14mm in diameter	28	13.49
S0710	Solanum lycopersicum	MicroTom	fruit , 5mm to 7mm in diameter	9	7.48
S0709	Solanum lycopersicum	MicroTom	fruit , 1mm to 3mm in diameter	6	3.4
S0708	Solanum lycopersicum	MicroTom	flower, open	2	0.62
S0707	Solanum lycopersicum	MicroTom	flower bud, closed bud before flower blooming	51	13.39
S0373	Solanum lycopersicum	Heinz 1706	fruit	691	206.83
S0372	Solanum lycopersicum	Heinz 1706	flower	331	100.17
S0371	Solanum lycopersicum	Heinz 1706	leaf	602	181.41

S17769336 mapped to the follwoing genes

gene ID	start position	stop position	strand	expression
Solyc08g083150	115	133	+	click here