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Expression of 1-1-5.1.10.12

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.031230.951
27DAP/17DAP1.051921
39DAP/27DAP1.189350.725
41DAP/39DAP0.886560.561
42DAP/41DAP1.1830.92
43DAP/42DAP1.321990.728
47DAP/43DAP0.874740.599
52DAP/47DAP0.825210.543
57DAP/52DAP1.085520.983

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.023310.9
17DAP/reference0.931550.321
27DAP/reference1.164980.264
39DAP/reference0.958980.513
41DAP/reference1.014821
42DAP/reference0.928310.124
43DAP/reference1.045430.942
47DAP/reference1.025581
52DAP/reference1.186410.096
57DAP/reference1.15110.136

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.853740.428
27DAP/17DAP1.042650.909
39DAP/27DAP1.870290.079
41DAP/39DAP3.342860.005
42DAP/41DAP0.608440.007
43DAP/42DAP0.499360.02
47DAP/43DAP1.003570.998
52DAP/47DAP1.343670.63
57DAP/52DAP0.520940.137
57DAP/7DAP0.798021

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.043820.6
17DAP/reference0.942020.072
27DAP/reference0.863450.01
39DAP/reference0.997340.745
41DAP/reference1.094790.097
42DAP/reference1.044240.534
43DAP/reference0.935240.061
47DAP/reference0.998931
52DAP/reference0.982350.571
57DAP/reference0.975980.458

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.13770.106
17DAP/reference1.1280.21
27DAP/reference1.181180.192
39DAP/reference1.278850.182
41DAP/reference1.363610.025
42DAP/reference1.010570.723
43DAP/reference1.12130.392
47DAP/reference0.931370.214
52DAP/reference1.209520.259
57DAP/reference1.076650.64

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.938140.098
17DAP/reference1.049670.627
27DAP/reference0.937150.286
39DAP/reference0.950570.393
41DAP/reference0.904550.077
42DAP/reference0.975940.671
43DAP/reference0.97360.545
47DAP/reference1.063560.655
52DAP/reference0.846890.296
57DAP/reference1.404780.044

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.004061
26DAP/20DAP0.914661
34DAP/26DAP1.294561
51DAP/34DAP1.322550.496
52DAP/51DAP0.764471
53DAP/52DAP1.063970.998
55DAP/53DAP1.096730.861
57DAP/55DAP1.032661
62DAP/57DAP0.69810.466
68DAP/62DAP1.421880.682
68DAP/14DAP1.031320.889

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.741650.015

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.720830.215
Mature Green Tomato/Ripe Tomato2.404210.016
Immature Eggplant/Mature Eggplant0.720210.096
Ripe Pepper/Ripe Tomato1.854260.258
Mature Eggplant/Ripe Tomato1.193910.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.813680.841
1-1-2/M821.153341
12-2/M820.937371
12-4/M821.120851
1-3/M820.92351
2-1-1/M820.91587N/A
2-1/M820.93041N/A
2-6/M820.934640.501
3-2/M821.10309N/A
4-1-1/M821.059860.968
4-1/M82N/AN/A
4-3-2/M820.86143N/A
4-3/M820.8280.72
5-3/M821.209240.378
6-2/M820.85931N/A
6-3/M820.974691
7-1/M821.74895N/A
7-2/M820.887470.881
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.951771
IL2-6/WTpooled1.298670.419
IL7-5/WTpooled0.938821
IL7-3/WTpooled1.326121
IL12-4/WTpooled0.910681
IL1-4/WTpooled0.97011
WT/WTpooled1.212371

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.287260.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.013851
DC3000/delta hrp 6h1.08040.95
DC3000/delta hrp 12h1.170881
DC3000/delta hrp 24h1.0930.502

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.99130.042
DC3000 delta B/DC3000 delta AB3.279540.031

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.003061
Exp 36h0.848580.449
Exp 60h0.827460.278

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.996851
Var 0h1.002471
Var 12h I row2-row10.760480.565
Var 12h NI row2-row12.214680.34
Var 36h I row2-row11.383010.742
Var 36h NI row2-row10.562740.522
Var 60h I row2-row10.841220.582
Var 60h NI row2-row10.678290.458
Time course 0hI-0hNI1.30040.603
Time course 12hI-12hNI1.191450.785
Time course 36hI-36hNI3.866070.004
Time course 60hI-60hNI11.23040.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.930210.338
transgenic ySAMdc/azygous control (breaker)0.874460.251
transgenic ySAMdc/azygous control (red)0.845821

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.973390.418

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.073991

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.412030.096
Manapal/WT (break)0.972751
Manapal/WT (red)0.853610.188