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Expression of 1-1-8.4.3.14

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.073920.67
27DAP/17DAP1.031071
39DAP/27DAP1.227980.804
41DAP/39DAP1.139580.569
42DAP/41DAP1.130790.863
43DAP/42DAP1.000410.937
47DAP/43DAP1.280550.223
52DAP/47DAP0.973380.865
57DAP/52DAP1.073760.948

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.973780.442
17DAP/reference1.061230.546
27DAP/reference1.048520.375
39DAP/reference0.805990.2
41DAP/reference1.134510.034
42DAP/reference1.021350.287
43DAP/reference1.15375N/A
47DAP/reference1.006490.764
52DAP/reference1.002081
57DAP/reference0.45349N/A

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.966930.644
27DAP/17DAP0.952540.724
39DAP/27DAP1.002480.874
41DAP/39DAP0.917730.617
42DAP/41DAP1.006861
43DAP/42DAP1.015980.699
47DAP/43DAP0.955660.588
52DAP/47DAP1.002680.987
57DAP/52DAP0.919790.339
57DAP/7DAP1.010081

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.829550.086
17DAP/reference0.783980.011
27DAP/reference0.758140.01
39DAP/reference0.819480.012
41DAP/reference0.947640.247
42DAP/reference0.755730.01
43DAP/reference0.764790.02
47DAP/reference0.933010.383
52DAP/reference0.750360.013
57DAP/reference0.675930.01

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.035520.491
17DAP/reference1.06030.243
27DAP/reference1.036290.629
39DAP/reference0.984370.485
41DAP/reference0.925160.04
42DAP/reference1.048680.455
43DAP/reference1.126240.526
47DAP/reference1.059040.353
52DAP/reference1.064580.114
57DAP/reference1.285340.027

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.872570.183
17DAP/reference0.891490.268
27DAP/reference0.80210.081
39DAP/reference0.73340.018
41DAP/reference0.809160.025
42DAP/reference0.728050.016
43DAP/reference0.809580.021
47DAP/reference0.9730.434
52DAP/reference0.661330.077
57DAP/reference0.738580.017

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.962451
26DAP/20DAP1.157030.581
34DAP/26DAP0.962440.898
51DAP/34DAP1.006190.988
52DAP/51DAP1.083080.304
53DAP/52DAP1.034940.901
55DAP/53DAP0.967480.619
57DAP/55DAP1.089580.461
62DAP/57DAP1.088690.767
68DAP/62DAP1.068461
68DAP/14DAP0.975681

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.017681

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.454860.058
Mature Green Tomato/Ripe Tomato0.699970.055
Immature Eggplant/Mature Eggplant17.47730.05
Ripe Pepper/Ripe Tomato2.258950.256
Mature Eggplant/Ripe Tomato2.359441

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.999141
1-1-2/M820.97051
12-2/M820.909460.955
12-4/M821.04268N/A
1-3/M820.865490.378
2-1-1/M820.94738N/A
2-1/M821.27415N/A
2-6/M821.044020.695
3-2/M821.11271
4-1-1/M820.928861
4-1/M821.10901N/A
4-3-2/M820.9635N/A
4-3/M821.012721
5-3/M821.094391
6-2/M821.24286N/A
6-3/M82N/AN/A
7-1/M820.997771
7-2/M820.979581
9-3-2/M821.03145N/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.024041
IL2-6/WTpooled1.047520.788
IL7-5/WTpooled0.880421
IL7-3/WTpooled1.22511
IL12-4/WTpooled1.024791
IL1-4/WTpooled1.004931
WT/WTpooled0.956621

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.022051

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.120430.823
DC3000/delta hrp 6h1.519070.195
DC3000/delta hrp 12h1.080741
DC3000/delta hrp 24h0.903130.412

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.092610.05
DC3000 delta B/DC3000 delta AB1.097830.398

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.109491
Exp 36h2.294360.409
Exp 60h2.360270.283

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.063361
Var 0h1.19690.594
Var 12h I row2-row11.166690.379
Var 12h NI row2-row11.059081
Var 36h I row2-row11.069541
Var 36h NI row2-row10.923670.45
Var 60h I row2-row10.75437N/A
Var 60h NI row2-row11.103040.904
Time course 0hI-0hNI1.016210.852
Time course 12hI-12hNI0.993451
Time course 36hI-36hNI1.006130.826
Time course 60hI-60hNI0.930590.081

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.531490.227
transgenic ySAMdc/azygous control (breaker)1.638811
transgenic ySAMdc/azygous control (red)1.036820.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.99450.757

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.816580.284

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.275680.172
Manapal/WT (break)0.830960.333
Manapal/WT (red)5.307430.133