Solyc03g082590 expression
Experiment: Transcriptome profiling of pennellii ILs
| sample ID | genotype | description | RPKM |
|---|
| S0001 |
M82 |
fruit, red ripe, M82 |
26.48 |
| S0002 |
1-1 |
fruit, red ripe, S. pennellii IL1-1 |
23.07 |
| S0003 |
1-1-2 |
fruit, red ripe, S. pennellii IL1-1-2 |
22.91 |
| S0004 |
1-1-3 |
fruit, red ripe, S. pennellii IL1-1-3 |
21.32 |
| S0005 |
1-2 |
fruit, red ripe, S. pennellii IL1-2 |
30.81 |
| S0006 |
1-3 |
fruit, red ripe, S. pennellii IL1-3 |
23.94 |
| S0007 |
1-4 |
fruit, red ripe, S. pennellii IL1-4 |
22.98 |
| S0008 |
1-4-18 |
fruit, red ripe, S. pennellii IL1-4-18 |
21.09 |
| S0009 |
2-1 |
fruit, red ripe, S. pennellii IL2-1 |
18.91 |
| S0010 |
2-1-1 |
fruit, red ripe, S. pennellii IL2-1-1 |
25.13 |
| S0011 |
2-2 |
fruit, red ripe, S. pennellii IL2-2 |
23.01 |
| S0012 |
2-3 |
fruit, red ripe, S. pennellii IL2-3 |
20.94 |
| S0013 |
2-4 |
fruit, red ripe, S. pennellii IL2-4 |
24.62 |
| S0014 |
2-5 |
fruit, red ripe, S. pennellii IL2-5 |
21.7 |
| S0015 |
2-6 |
fruit, red ripe, S. pennellii IL2-6 |
22.57 |
| S0016 |
2-6-5 |
fruit, red ripe, S. pennellii IL2-6-5 |
22.07 |
| S0017 |
3-1 |
fruit, red ripe, S. pennellii IL3-1 |
21.83 |
| S0018 |
3-2 |
fruit, red ripe, S. pennellii IL3-2 |
28.78 |
| S0020 |
3-4 |
fruit, red ripe, S. pennellii IL3-4 |
26.26 |
| S0021 |
3-5 |
fruit, red ripe, S. pennellii IL3-5 |
19.79 |
| S0022 |
4-1 |
fruit, red ripe, S. pennellii IL4-1 |
22.03 |
| S0023 |
4-1-1 |
fruit, red ripe, S. pennellii IL4-1-1 |
24.17 |
| S0024 |
4-2 |
fruit, red ripe, S. pennellii IL4-2 |
27.62 |
| S0025 |
4-3 |
fruit, red ripe, S. pennellii IL4-3 |
26.38 |
| S0026 |
4-3-2 |
fruit, red ripe, S. pennellii IL4-3-2 |
23.66 |
| S0027 |
4-4 |
fruit, red ripe, S. pennellii IL4-4 |
28.81 |
| S0028 |
5-1 |
fruit, red ripe, S. pennellii IL5-1 |
24.56 |
| S0029 |
5-2 |
fruit, red ripe, S. pennellii IL5-2 |
23.7 |
| S0030 |
5-3 |
fruit, red ripe, S. pennellii IL5-3 |
21.11 |
| S0031 |
5-4 |
fruit, red ripe, S. pennellii IL5-4 |
24.67 |
| S0032 |
5-5 |
fruit, red ripe, S. pennellii IL5-5 |
24.12 |
| S0034 |
6-2 |
fruit, red ripe, S. pennellii IL6-2 |
22.93 |
| S0035 |
6-2-2 |
fruit, red ripe, S. pennellii IL6-2-2 |
17.17 |
| S0036 |
6-3 |
fruit, red ripe, S. pennellii IL6-3 |
27.1 |
| S0037 |
6-4 |
fruit, red ripe, S. pennellii IL6-4 |
24.68 |
| S0038 |
7-1 |
fruit, red ripe, S. pennellii IL7-1 |
20.34 |
| S0039 |
7-2 |
fruit, red ripe, S. pennellii IL7-2 |
23.54 |
| S0040 |
7-3 |
fruit, red ripe, S. pennellii IL7-3 |
22.67 |
| S0041 |
7-4 |
fruit, red ripe, S. pennellii IL7-4 |
23.76 |
| S0042 |
7-4-1 |
fruit, red ripe, S. pennellii IL7-4-1 |
19.76 |
| S0043 |
7-5 |
fruit, red ripe, S. pennellii IL7-5 |
22.59 |
| S0044 |
7-5-5 |
fruit, red ripe, S. pennellii IL7-5-5 |
23.96 |
| S0045 |
8-1 |
fruit, red ripe, S. pennellii IL8-1 |
25.71 |
| S0046 |
8-1-1 |
fruit, red ripe, S. pennellii IL8-1-1 |
27.53 |
| S0047 |
8-1-5 |
fruit, red ripe, S. pennellii IL8-1-5 |
21.59 |
| S0048 |
8-2 |
fruit, red ripe, S. pennellii IL8-2 |
22.51 |
| S0049 |
8-2-1 |
fruit, red ripe, S. pennellii IL8-2-1 |
23.9 |
| S0050 |
8-3 |
fruit, red ripe, S. pennellii IL8-3 |
22.78 |
| S0051 |
8-3-1 |
fruit, red ripe, S. pennellii IL8-3-1 |
24 |
| S0052 |
9-1 |
fruit, red ripe, S. pennellii IL9-1 |
26.92 |
| S0053 |
9-1-2 |
fruit, red ripe, S. pennellii IL9-1-2 |
26.27 |
| S0054 |
9-1-3 |
fruit, red ripe, S. pennellii IL9-1-3 |
24.75 |
| S0055 |
9-2 |
fruit, red ripe, S. pennellii IL9-2 |
27.59 |
| S0056 |
9-2-5 |
fruit, red ripe, S. pennellii IL9-2-5 |
24.88 |
| S0057 |
9-2-6 |
fruit, red ripe, S. pennellii IL9-2-6 |
27.15 |
| S0058 |
9-3 |
fruit, red ripe, S. pennellii IL9-3 |
21.7 |
| S0059 |
9-3-1 |
fruit, red ripe, S. pennellii IL9-3-1 |
22.6 |
| S0060 |
9-3-2 |
fruit, red ripe, S. pennellii IL9-3-2 |
22.92 |
| S0061 |
10-1 |
fruit, red ripe, S. pennellii IL10-1 |
22.94 |
| S0062 |
10-1-1 |
fruit, red ripe, S. pennellii IL10-1-1 |
21.99 |
| S0063 |
10-2 |
fruit, red ripe, S. pennellii IL10-2 |
23.69 |
| S0064 |
10-2-2 |
fruit, red ripe, S. pennellii IL10-2-2 |
23.83 |
| S0065 |
10-3 |
fruit, red ripe, S. pennellii IL10-3 |
22.31 |
| S0066 |
11-1 |
fruit, red ripe, S. pennellii IL11-1 |
20.23 |
| S0067 |
11-2 |
fruit, red ripe, S. pennellii IL11-2 |
20.73 |
| S0068 |
11-3 |
fruit, red ripe, S. pennellii IL11-3 |
21.83 |
| S0069 |
11-4 |
fruit, red ripe, S. pennellii IL11-4 |
23.15 |
| S0070 |
11-4-1 |
fruit, red ripe, S. pennellii IL11-4-1 |
22.47 |
| S0071 |
12-1 |
fruit, red ripe, S. pennellii IL12-1 |
17.27 |
| S0072 |
12-1-1 |
fruit, red ripe, S. pennellii IL12-1-1 |
17.64 |
| S0073 |
12-2 |
fruit, red ripe, S. pennellii IL12-2 |
24.29 |
| S0074 |
12-3 |
fruit, red ripe, S. pennellii IL12-3 |
19.45 |
| S0075 |
12-3-1 |
fruit, red ripe, S. pennellii IL12-3-1 |
21.29 |
| S0076 |
12-4 |
fruit, red ripe, S. pennellii IL12-4 |
26.01 |
| S0077 |
12-4-1 |
fruit, red ripe, S. pennellii IL12-4-1 |
23.69 |
Experiment: Transcriptome analysis of various tissues in tomato cultivar Heinz and the wild relative Solanum pimpinellifolium
| sample ID | genotype | description | RPKM |
|---|
| S0584 |
Heinz |
Heinz unopened flower buds |
23.9 |
| S0585 |
Heinz |
Heinz fully opened flowers |
24.28 |
| S0586 |
Heinz |
Heinz 1 cm fruits |
25.41 |
| S0587 |
Heinz |
Heinz 2 cm fruits |
24.97 |
| S0588 |
Heinz |
Heinz 3 cm fruits |
28.88 |
| S0589 |
Heinz |
Heinz mature green fruits |
26.58 |
| S0590 |
Heinz |
Heinz breaker fruits |
23.55 |
| S0591 |
Heinz |
Heinz breaker+10 fruits |
25.13 |
| S0592 |
Heinz |
Heinz roots |
61.68 |
| S0593 |
Heinz |
Heinz leaves |
17.58 |
| S0594 |
|
pimpinellifolium immature green fruits |
43.56 |
| S0595 |
|
pimpinellifolium breaker fruits |
43.36 |
| S0596 |
|
pimpinellifolium breaker+5 fruits |
33.47 |
| S0597 |
|
pimpinellifolium leaves |
10.38 |
Experiment: Transcriptome profiling of young flower buds of WT, sun, ovate and fs8.1 NILs in the LA1589 background
| sample ID | genotype | description | RPKM |
|---|
| S0929 |
LA1589 |
LA1589 young flower buds at 4 days post-initiation of floral meristem |
48.34 |
| S0930 |
LA1589 |
LA1589 young flower buds at 6 days post-initiation of floral meristem |
48.41 |
| S0931 |
LA1589 |
LA1589 young flower buds at 8 days post-initiation of floral meristem |
51 |
| S0932 |
LA1589 |
LA1589 young flower buds at 10 days post-initiation of floral meristem |
37.32 |
| S0933 |
LA1589 |
LA1589 young flower buds at 13 days post-initiation of floral meristem |
38.86 |
| S0934 |
LA1589 |
LA1589 young flower buds at 16 days post-initiation of floral meristem |
36.24 |
| S0935 |
sun NIL in the LA1589 background |
sun young flower buds at 4 days post-initiation of floral meristem |
48.59 |
| S0936 |
sun NIL in the LA1589 background |
sun young flower buds at 6 days post-initiation of floral meristem |
48.15 |
| S0937 |
sun NIL in the LA1589 background |
sun young flower buds at 8 days post-initiation of floral meristem |
49.29 |
| S0938 |
sun NIL in the LA1589 background |
sun young flower buds at 10 days post-initiation of floral meristem |
35.95 |
| S0939 |
sun NIL in the LA1589 background |
sun young flower buds at 13 days post-initiation of floral meristem |
39.52 |
| S0940 |
sun NIL in the LA1589 background |
sun young flower buds at 16 days post-initiation of floral meristem |
40.96 |
| S0941 |
ovate NIL in the LA1589 background |
ovate young flower buds at 4 days post-initiation of floral meristem |
48.81 |
| S0942 |
ovate NIL in the LA1589 background |
ovate young flower buds at 6 days post-initiation of floral meristem |
44.58 |
| S0943 |
ovate NIL in the LA1589 background |
ovate young flower buds at 8 days post-initiation of floral meristem |
51.72 |
| S0944 |
ovate NIL in the LA1589 background |
ovate young flower buds at 10 days post-initiation of floral meristem |
35.94 |
| S0945 |
ovate NIL in the LA1589 background |
ovate young flower buds at 13 days post-initiation of floral meristem |
40.44 |
| S0946 |
ovate NIL in the LA1589 background |
ovate young flower buds at 16 days post-initiation of floral meristem |
37.5 |
| S0947 |
fs8.1 NIL in the LA1589 background |
fs8.1 young flower buds at 4 days post-initiation of floral meristem |
50.31 |
| S0948 |
fs8.1 NIL in the LA1589 background |
fs8.1 young flower buds at 6 days post-initiation of floral meristem |
47.12 |
| S0949 |
fs8.1 NIL in the LA1589 background |
fs8.1 young flower buds at 8 days post-initiation of floral meristem |
49.33 |
| S0950 |
fs8.1 NIL in the LA1589 background |
fs8.1 young flower buds at 10 days post-initiation of floral meristem |
36.96 |
| S0951 |
fs8.1 NIL in the LA1589 background |
fs8.1 young flower buds at 13 days post-initiation of floral meristem |
40.02 |
| S0952 |
fs8.1 NIL in the LA1589 background |
fs8.1 young flower buds at 16 days post-initiation of floral meristem |
34.77 |
Experiment: Transcriptome analysis of various tissues in wild species S. pimpinellifolium, LA1589
| sample ID | genotype | description | RPKM |
|---|
| S0608 |
LA1589 |
anthesis flowers (0DPA) |
26.3 |
| S0609 |
LA1589 |
10 days post anthesis fruit (10 DPA1) |
41.32 |
| S0610 |
LA1589 |
10 days post anthesis fruit 2 (10 DPA2) |
45.03 |
| S0611 |
LA1589 |
20 days post anthesis fruit (20DPA) |
39.39 |
| S0612 |
LA1589 |
rippening fruit (33DPA) |
29.87 |
| S0613 |
LA1589 |
cotyledons (COTYL) |
36.6 |
| S0614 |
LA1589 |
hypocotyl (HYPO) |
63.61 |
| S0615 |
LA1589 |
vegitative meristems (MERI) |
60.68 |
| S0616 |
LA1589 |
mature leaves (ML) |
14.55 |
| S0617 |
LA1589 |
whole root (ROOT) |
75.09 |
| S0618 |
LA1589 |
young flower buds (YFB) |
34.99 |
| S0619 |
LA1589 |
young leaves (YL) |
25.62 |
Experiment: Transcriptome sequencing of tomato leaves treated with different bacteria and PAMPs
| sample ID | genotype | description | RPKM |
|---|
| S0620 |
Rio Grande prf3 (deletion in Prf) |
mock PAMPs 30 min |
10.7 |
| S0621 |
Rio Grande prf3 (deletion in Prf) |
cold shock protein 22 (csp22) 30 min |
9.77 |
| S0622 |
Rio Grande prf3 (deletion in Prf) |
flagellin 22 (flg22) 30 min |
10.25 |
| S0623 |
Rio Grande prf3 (deletion in Prf) |
flagellin II-28 (flgII-28) 30 min |
8.65 |
| S0624 |
Rio Grande prf3 (deletion in Prf) |
Lipopolysaccharides (LPS) 30 min |
10.92 |
| S0625 |
Rio Grande prf3 (deletion in Prf) |
Peptidoglycan (PGN) 30 min |
10.54 |
| S0626 |
Rio Grande prf3 (deletion in Prf) |
mock PAMPs 6h |
21.22 |
| S0627 |
Rio Grande prf3 (deletion in Prf) |
cold shock protein 22 (csp22) 6 h |
30.48 |
| S0628 |
Rio Grande prf3 (deletion in Prf) |
flagellin 22 (flg22) 6h |
28.43 |
| S0629 |
Rio Grande prf3 (deletion in Prf) |
flagellin II-28 (flgII-28) 6h |
29.1 |
| S0630 |
Rio Grande prf3 (deletion in Prf) |
Lipopolysaccharides (LPS) 6 h |
23.6 |
| S0631 |
Rio Grande prf3 (deletion in Prf) |
Peptidoglycan (PGN) 6h |
25.75 |
| S0632 |
Rio Grande prf3 (deletion in Prf) |
mock bacteria 30 min |
10.85 |
| S0633 |
Rio Grande prf3 (deletion in Prf) |
DC3000 30 min |
10.87 |
| S0634 |
Rio Grande prf3 (deletion in Prf) |
DC3000ΔhrcQ-U 30 min |
10 |
| S0635 |
Rio Grande prf3 (deletion in Prf) |
DC3000ΔhrcQ-UΔfliC 30 min |
9.53 |
| S0636 |
Rio Grande prf3 (deletion in Prf) |
DC3000Δ28 30 min |
10.21 |
| S0637 |
Rio Grande prf3 (deletion in Prf) |
DC3000ΔAvrPtoΔAvrPtoB 30 min |
9.74 |
| S0638 |
Rio Grande prf3 (deletion in Prf) |
Pseudomonas fluorescens 30 min |
10.98 |
| S0639 |
Rio Grande prf3 (deletion in Prf) |
Pseudomonas putida 30 min |
11.16 |
| S0640 |
Rio Grande prf3 (deletion in Prf) |
Agrobacterium tumefaciens 30 min |
10.82 |
| S0641 |
Rio Grande prf3 (deletion in Prf) |
mock bacteria 6 h |
23.42 |
| S0642 |
Rio Grande prf3 (deletion in Prf) |
DC3000 6 h |
28.48 |
| S0643 |
Rio Grande prf3 (deletion in Prf) |
DC3000ΔhrcQ-U 6 h |
27.65 |
| S0644 |
Rio Grande prf3 (deletion in Prf) |
DC3000ΔhrcQ-UΔfliC 6 h |
21.94 |
| S0645 |
Rio Grande prf3 (deletion in Prf) |
DC3000Δ28 6 h |
26.92 |
| S0646 |
Rio Grande prf3 (deletion in Prf) |
DC3000ΔAvrPtoΔAvrPtoB 6 h |
27.56 |
| S0647 |
Rio Grande prf3 (deletion in Prf) |
Pseudomonas fluorescens 6 h |
31.48 |
| S0648 |
Rio Grande prf3 (deletion in Prf) |
Pseudomonas putida 6 h |
31.24 |
| S0649 |
Rio Grande prf3 (deletion in Prf) |
Agrobacterium tumefaciens 6 h |
21.14 |
Experiment: Transcriptome or gene expression of various fruit tissue in FW3.2 NILs
| sample ID | genotype | description | RPKM |
|---|
| S0671 |
Yellow Stuffer (cultivated allele of fw3.2) |
fw3.2(ys) 5 Days Post Anthesis Pericarp |
23.34 |
| S0672 |
Yellow Stuffer (wild allele of fw3.2) |
fw3.2(wt) 5 Days Post Anthesis Pericarp |
23.81 |
| S0673 |
Yellow Stuffer (cultivated allele of fw3.2) |
fw3.2(ys) 7 Days Post Anthesis Pericarp |
24.03 |
| S0674 |
Yellow Stuffer (wild allele of fw3.2) |
fw3.2(wt) 7 Days Post Anthesis Pericarp |
24.37 |
| S0675 |
Yellow Stuffer (cultivated allele of fw3.2) |
fw3.2(ys) 10 Days Post Anthesis Pericarp |
21.57 |
| S0676 |
Yellow Stuffer (wild allele of fw3.2) |
fw3.2(wt) 10 Days Post Anthesis Pericarp |
20.65 |
| S0677 |
Yellow Stuffer (cultivated allele of fw3.2) |
fw3.2(ys) 5 Days Post Anthesis Seed |
25.22 |
| S0678 |
Yellow Stuffer (wild allele of fw3.2) |
fw3.2(wt) 5 Days Post Anthesis Seed |
25.44 |
| S0679 |
Yellow Stuffer (cultivated allele of fw3.2) |
fw3.2(ys) 7 Days Post Anthesis Seed |
25.89 |
| S0680 |
Yellow Stuffer (wild allele of fw3.2) |
fw3.2(wt) 7 Days Post Anthesis Seed |
24.9 |
| S0681 |
Yellow Stuffer (cultivated allele of fw3.2) |
fw3.2(ys) 10 Days Post Anthesis Seed |
25.3 |
| S0682 |
Yellow Stuffer (wild allele of fw3.2) |
fw3.2(wt) 10 Days Post Anthesis Seed |
24.05 |
| S0683 |
Yellow Stuffer (cultivated allele of fw3.2) |
fw3.2(ys) young flower bud |
36.66 |
| S0684 |
Yellow Stuffer (wild allele of fw3.2) |
fw3.2(wt) young flower bud |
42.92 |
Experiment: Tissue-specific transcriptome profiling of Solanum pimpinellifolium ovaries and fruit using LCM-coupled to RNA-seq
| sample ID | genotype | description | RPKM |
|---|
| S0685 |
LA1589 |
LA1589, Ovule 0 dpa (SA1_D0_OV) |
53.41 |
| S0686 |
sun |
sun, Ovule 0 dpa (SA2_D0_OV) |
55.23 |
| S0687 |
LA1589 |
LA1589, Placenta 0 dpa (SA1_D0_PL) |
71 |
| S0688 |
sun |
sun, Placenta 0 dpa (SA2_D0_PL) |
64.38 |
| S0689 |
LA1589 |
LA1589, Septum 0 dpa (SA1_D0_SE) |
53.1 |
| S0690 |
sun |
sun, Septum 0 dpa (SA2_D0_SE) |
62.9 |
| S0691 |
LA1589 |
LA1589, Pericarp 0 dpa (SA1_D0_PE) |
72.31 |
| S0692 |
sun |
sun, Pericarp 0 dpa (SA2_D0_PE) |
48.53 |
| S0693 |
LA1589 |
LA1589, Embryo 4 dpa Fruit (SA1_D4_EM) |
50.22 |
| S0694 |
sun |
sun, Embryo 4 dpa Fruit (SA2_D4_EM) |
41.47 |
| S0695 |
LA1589 |
LA1589, Endosperm 4 dpa Fruit (SA1_D4_ENDO) |
53.64 |
| S0696 |
sun |
sun, Endosperm 4 dpa Fruit (SA2_D4_ENDO) |
66.28 |
| S0697 |
LA1589 |
LA1589, Seed Coat 4 dpa Fruit (SA1_D4_SC) |
80.27 |
| S0698 |
sun |
sun, Seed Coat 4 dpa Fruit (SA2_D4_SC) |
80.47 |
| S0699 |
LA1589 |
LA1589, Funiculus 4 dpa Fruit (SA1_D4_FU) |
103.52 |
| S0700 |
sun |
sun, Funiculus 4 dpa Fruit (SA2_D4_FU) |
83.7 |
| S0701 |
LA1589 |
LA1589, Placenta 4 dpa Fruit (SA1_D4_PL) |
83.07 |
| S0702 |
sun |
sun, Placenta 4 dpa Fruit (SA2_D4_PL) |
55.82 |
| S0703 |
LA1589 |
LA1589, Septum 4 dpa Fruit (SA1_D4_SE) |
68.73 |
| S0704 |
sun |
sun, Septum 4 dpa Fruit (SA2_D4_SE) |
71.84 |
| S0705 |
LA1589 |
LA1589, Pericarp 4 dpa Fruit (SA1_D4_PE) |
60.58 |
| S0706 |
sun |
sun, Pericarp 4 dpa Fruit (SA2_D4_PE) |
52.66 |
Experiment: Transcriptome sequencing of leaves of resistant (RG-PtoR) and susceptible (RG-prf3 and RG-prf19) tomato plants treated with Pst DC3000
| sample ID | genotype | description | RPKM |
|---|
| S0740 |
Rio Grande-PtoR |
DC3000 4 h |
15.23 |
| S0741 |
Rio Grande-prf3 |
DC3000 4 h |
27.37 |
| S0742 |
Rio Grande-prf19 |
DC3000 4 h |
28.41 |
| S0743 |
Rio Grande-PtoR |
DC3000 6 h |
24.48 |
| S0744 |
Rio Grande-prf3 |
DC3000 6 h |
26.7 |
| S0745 |
Rio Grande-prf19 |
DC3000 6 h |
29.2 |
Experiment: Transcriptome sequencing of tomato leaves trated with diferent Pst DC3000 mutant strains
| sample ID | genotype | description | RPKM |
|---|
| S0746 |
Rio Grande-PtoR |
DC3000ΔhopQ1-1 ΔfliC 6 h |
25.47 |
| S0747 |
Rio Grande-PtoR |
DC3000ΔhopQ1-1 ΔavrPto ΔavrPtoB 6 h |
21.78 |
| S0748 |
Rio Grande-PtoR |
DC3000ΔhopQ1-1 ΔavrPto ΔavrPtoB ΔfliC 6 h |
17.3 |
Experiment: Transcriptome profiling of anthesis-stage ovaries from the fs8.1 backcrossed lines in Rio Grande background
| sample ID | genotype | description | RPKM |
|---|
| S0749 |
fs8.1, backcrossed line 09S204, BC4F2, Rio Grande background |
09S204-ee, ovary(anthesis) |
45.98 |
| S0750 |
WT, backcrossed line 09S204, BC4F2, Rio Grande background |
09S204-pp, ovary(anthesis) |
46.4 |
| S0751 |
fs8.1, backcrossed line 09S236, BC3F2, Rio Grande background |
09S236-ee, ovary(anthesis) |
46.16 |
| S0752 |
WT, backcrossed line 09S236, BC3F2, Rio Grande background |
09S236-pp, ovary(anthesis) |
48.32 |
| S0753 |
fs8.1, backcrossed line 09S237, BC1F4, Rio Grande background |
09S237-ee, ovary(anthesis) |
43.11 |
| S0754 |
WT, backcrossed line 09S237, BC1F4, Rio Grande background |
09S237-pp, ovary(anthesis) |
40.42 |
Experiment: Domain-wise effect of AvrPto on the tomato transcriptome 6 hours post inoculation
| sample ID | genotype | description | RPKM |
|---|
| S0755 |
Rio Grande-prf3 |
D28E (pCPP45::avrPto) 6 h |
13.71 |
| S0756 |
Rio Grande-prf3 |
D28E (pCPP45::avrPto I96A) 6 h |
17.43 |
| S0757 |
Rio Grande-prf3 |
D28E (pCPP45::avrPto 2xA) 6 h |
14.94 |
| S0758 |
Rio Grande-prf3 |
D28E (pCPP45::avrPto I96A + 2xA) 6 h |
17.25 |
| S0759 |
Rio Grande-prf3 |
Mock 6 h |
11.61 |
Experiment: Transcriptome sequencing of Pti1 silenced plants after treatment of Pst DC3000ΔAvrPtoΔAvrPtoB
| sample ID | genotype | description | RPKM |
|---|
| S0658 |
Rio Grande prf3 (deletion in Prf) |
Azygous of hpPti1 DC3000ΔAvrPtoΔAvrPtoB 3 h |
21.74 |
| S0659 |
Rio Grande prf3 (deletion in Prf) |
hpPti1-F10 DC3000ΔAvrPtoΔAvrPtoB 3 h |
22.8 |
| S0660 |
Rio Grande prf3 (deletion in Prf) |
hpPti1-F27 DC3000ΔAvrPtoΔAvrPtoB 3 h |
21.96 |
| S0661 |
Rio Grande prf3 (deletion in Prf) |
Azygous of hpPti1 DC3000ΔAvrPtoΔAvrPtoB 6 h |
19.54 |
| S0662 |
Rio Grande prf3 (deletion in Prf), hairpin Pti1, line F10 |
hpPti1-F10 DC3000ΔAvrPtoΔAvrPtoB 6 h |
17.58 |
| S0663 |
Rio Grande prf3 (deletion in Prf), hairpin Pti1, line F27 |
hpPti1-F27 ΔAvrPtoΔAvrPtoB 6 h |
19.57 |
Experiment: Gene expression in IM/FM, 2 dpi, 4 dpi and 6 dpi floral buds of wild type, lc, fas and lc/fas in the LA1589 background
| sample ID | genotype | description | RPKM |
|---|
| S1087 |
LA1589 |
2dpi floral buds |
726.81 |
| S1088 |
lc |
2dpi floral buds |
661.92 |
| S1089 |
fas |
2dpi floral buds |
674.08 |
| S1090 |
lc/fas |
2dpi floral buds |
723.53 |
| S1091 |
LA1589 |
4dpi floral buds |
637.51 |
| S1092 |
lc |
4dpi floral buds |
710.09 |
| S1093 |
fas |
4dpi floral buds |
710.45 |
| S1094 |
lc/fas |
4dpi floral buds |
621.31 |
| S1095 |
LA1589 |
6dpi floral buds |
624.31 |
| S1096 |
lc |
6dpi floral buds |
720.92 |
| S1097 |
fas |
6dpi floral buds |
652.64 |
| S1098 |
lc/fas |
6dpi floral buds |
577.33 |
| S1099 |
LA1589 |
floral and inflorescence meristem |
751.87 |
| S1100 |
lc |
floral and inflorescence meristem |
823.14 |
| S1101 |
fas |
floral and inflorescence meristem |
742.7 |
| S1102 |
lc/fas |
floral and inflorescence meristem |
755.97 |
| S1103 |
LA1589 |
sympodial shoot apical meristem |
663.99 |
| S1104 |
lc |
sympodial shoot apical meristem |
955.32 |
| S1105 |
fas |
sympodial shoot apical meristem |
811.5 |
| S1106 |
lc/fas |
sympodial shoot apical meristem |
839.21 |
Experiment: RNA-Seq analysis on tomato anthesis flowers of ovate/sov1 NILs in the LA1589 background
| sample ID | genotype | description | RPKM |
|---|
| S0764 |
LA1589 |
LA1589, flowers |
33.58 |
| S0765 |
ovate |
ovate, flowers |
36.94 |
| S0766 |
sov1 |
sov1, flowers |
31.47 |
| S0767 |
ovate/sov1 |
ovate/sov1, flowers |
39.75 |
Experiment: Transcriptome profiling of three fruit tissues from the fw11.3 NILs in cultivated background
| sample ID | genotype | description | RPKM |
|---|
| S0768 |
Rio Grande (fw11.3-D) |
fw11.3-D Pericarp, 10 Days Post Anthesis |
27.13 |
| S0769 |
Rio Grande (fw11.3-D) |
fw11.3-D Septum and Placenta, 10 Days Post Anthesis |
30.04 |
| S0770 |
Rio Grande (fw11.3-D) |
fw11.3-D Columella, 10 Days Post Anthesis |
37.81 |
| S0771 |
Rio Grande (fw11.3-D) |
fw11.3-D Pericarp, 15 Days Post Anthesis |
27.26 |
| S0772 |
Rio Grande (fw11.3-D) |
fw11.3-D Septum and Placenta, 15 Days Post Anthesis |
30.98 |
| S0773 |
Rio Grande (fw11.3-D) |
fw11.3-D Columella, 15 Days Post Anthesis |
39.16 |
| S0774 |
Rio Grande (fw11.3-D) |
fw11.3-D Pericarp, 25 Days Post Anthesis |
24.48 |
| S0775 |
Rio Grande (fw11.3-D) |
fw11.3-D Septum and Placenta, 25 Days Post Anthesis |
28.91 |
| S0776 |
Rio Grande (fw11.3-D) |
fw11.3-D Columella, 25 Days Post Anthesis |
34.14 |
| S0777 |
Rio Grande (fw11.3-D) |
fw11.3-D Pericarp, 33 Days Post Anthesis |
30.57 |
| S0778 |
Rio Grande (fw11.3-D) |
fw11.3-D Septum and Placenta, 33 Days Post Anthesis |
29.14 |
| S0779 |
Rio Grande (fw11.3-D) |
fw11.3-D Columella, 33 Days Post Anthesis |
34.25 |
| S0780 |
Rio Grande (fw11.3-D) |
fw11.3-D Pericarp, 4 Days Post Anthesis |
31.53 |
| S0781 |
Rio Grande (fw11.3-D) |
fw11.3-D Septum, Placenta and Columella, 4 Days Post Anthesis |
33.61 |
| S0782 |
Rio Grande (fw11.3-D) |
fw11.3-D Pericarp, 7 Days Post Anthesis |
28.39 |
| S0783 |
Rio Grande (fw11.3-D) |
fw11.3-D Septum and Placenta, 7 Days Post Anthesis |
30.38 |
| S0784 |
Rio Grande (fw11.3-D) |
fw11.3-D Columella, 7 Days Post Anthesis |
36.03 |
| S0785 |
Rio Grande (fw11.3-D) |
fw11.3-D Pericarp, Turning |
25.82 |
| S0786 |
Rio Grande (fw11.3-D) |
fw11.3-D Septum and Placenta, Turning |
26.03 |
| S0787 |
Rio Grande (fw11.3-D) |
fw11.3-D Columella, Turning |
36.79 |
| S0788 |
Rio Grande (fw11.3-WT) |
fw11.3-WT Pericarp, 10 Days Post Anthesis |
28.47 |
| S0789 |
Rio Grande (fw11.3-WT) |
fw11.3-WT Septum and Placenta, 10 Days Post Anthesis |
29.5 |
| S0790 |
Rio Grande (fw11.3-WT) |
fw11.3-WT Columella, 10 Days Post Anthesis |
40.9 |
| S0791 |
Rio Grande (fw11.3-WT) |
fw11.3-WT Pericarp, 15 Days Post Anthesis |
25.61 |
| S0792 |
Rio Grande (fw11.3-WT) |
fw11.3-WT Septum and Placenta, 15 Days Post Anthesis |
29.21 |
| S0793 |
Rio Grande (fw11.3-WT) |
fw11.3-WT Columella, 15 Days Post Anthesis |
38.41 |
| S0794 |
Rio Grande (fw11.3-WT) |
fw11.3-WT Pericarp, 25 Days Post Anthesis |
24.54 |
| S0795 |
Rio Grande (fw11.3-WT) |
fw11.3-WT Septum and Placenta, 25 Days Post Anthesis |
27.85 |
| S0796 |
Rio Grande (fw11.3-WT) |
fw11.3-WT Columella, 25 Days Post Anthesis |
33.41 |
| S0797 |
Rio Grande (fw11.3-WT) |
fw11.3-WT Pericarp, 33 Days Post Anthesis |
26.69 |
| S0798 |
Rio Grande (fw11.3-WT) |
fw11.3-WT Septum and Placenta, 33 Days Post Anthesis |
29.94 |
| S0799 |
Rio Grande (fw11.3-WT) |
fw11.3-WT Columella, 33 Days Post Anthesis |
41.11 |
| S0800 |
Rio Grande (fw11.3-WT) |
fw11.3-WT Pericarp, 4 Days Post Anthesis |
30.01 |
| S0801 |
Rio Grande (fw11.3-WT) |
fw11.3-WT Septum, Placenta and Columella, 4 Days Post Anthesis |
34.7 |
| S0802 |
Rio Grande (fw11.3-WT) |
fw11.3-WT Pericarp, 7 Days Post Anthesis |
29.13 |
| S0803 |
Rio Grande (fw11.3-WT) |
fw11.3-WT Septum and Placenta, 7 Days Post Anthesis |
30.72 |
| S0804 |
Rio Grande (fw11.3-WT) |
fw11.3-WT Columella, 7 Days Post Anthesis |
35.88 |
| S0805 |
Rio Grande (fw11.3-WT) |
fw11.3-WT Pericarp, Turning |
28.93 |
| S0806 |
Rio Grande (fw11.3-WT) |
fw11.3-WT Septum and Placenta, Turning |
26.04 |
| S0807 |
Rio Grande (fw11.3-WT) |
fw11.3-WT Columella, Turning |
33.99 |
Experiment: Transcriptome profiling of three fruit tissues from the sun NILs in cultivated background
| sample ID | genotype | description | RPKM |
|---|
| S0808 |
Sun1642 (sun-WT) |
SA3 Pericarp and exocarp, 4 Days Post Anthesis |
26.39 |
| S0809 |
Sun1642 (sun-WT) |
SA3 Septum and seeds, 4 Days Post Anthesis |
27.18 |
| S0810 |
Sun1642 (sun-WT) |
SA3 Pericarp, 7 Days Post Anthesis |
29.41 |
| S0811 |
Sun1642 (sun-WT) |
SA3 Septum, 7 Days Post Anthesis |
27.99 |
| S0812 |
Sun1642 (sun-WT) |
SA3 Seeds, 7 Days Post Anthesis |
29.91 |
| S0813 |
Sun1642 (sun-WT) |
SA3 Pericarp, 10 Days Post Anthesis |
26.66 |
| S0814 |
Sun1642 (sun-WT) |
SA3 Septum, 10 Days Post Anthesis |
32.39 |
| S0815 |
Sun1642 (sun-WT) |
SA3 Seeds, 10 Days Post Anthesis |
26.37 |
| S0816 |
Sun1642 (sun-D) |
SA4 Pericarp and exocarp, 4 Days Post Anthesis |
26.31 |
| S0817 |
Sun1642 (sun-D) |
SA4 Septum and seeds, 4 Days Post Anthesis |
28.52 |
| S0818 |
Sun1642 (sun-D) |
SA4 Pericarp, 7 Days Post Anthesis |
26.51 |
| S0819 |
Sun1642 (sun-D) |
SA4 Septum, 7 Days Post Anthesis |
28.1 |
| S0820 |
Sun1642 (sun-D) |
SA4 Seeds, 7 Days Post Anthesis |
26.49 |
| S0821 |
Sun1642 (sun-D) |
SA4 Pericarp, 10 Days Post Anthesis |
25.78 |
| S0822 |
Sun1642 (sun-D) |
SA4 Septum, 10 Days Post Anthesis |
30.92 |
| S0823 |
Sun1642 (sun-D) |
SA4 Seeds, 10 Days Post Anthesis |
26.01 |
Experiment: Transcriptome profiling of ripe fruits of S. lycopersicoides ILs
| sample ID | genotype | description | RPKM |
|---|
| S0824 |
VF36 |
fruit, red ripe, VF36 |
24.84 |
| S0825 |
LA3882 |
fruit, red ripe, S. lycopersicoides IL LA3882 |
27.48 |
| S0826 |
LA3886 |
fruit, red ripe, S. lycopersicoides IL LA3886 |
24.28 |
| S0827 |
LA3892 |
fruit, red ripe, S. lycopersicoides IL LA3892 |
27.48 |
| S0828 |
LA4230 |
fruit, red ripe, S. lycopersicoides IL LA4230 |
27.95 |
| S0829 |
LA4231 |
fruit, red ripe, S. lycopersicoides IL LA4231 |
27.14 |
| S0830 |
LA4232 |
fruit, red ripe, S. lycopersicoides IL LA4232 |
26.28 |
| S0831 |
LA4233 |
fruit, red ripe, S. lycopersicoides IL LA4233 |
25.04 |
| S0832 |
LA4234A |
fruit, red ripe, S. lycopersicoides IL LA4234A |
26.02 |
| S0833 |
LA4234B |
fruit, red ripe, S. lycopersicoides IL LA4234B |
26.55 |
| S0834 |
LA4235 |
fruit, red ripe, S. lycopersicoides IL LA4235 |
24.77 |
| S0835 |
LA4236A |
fruit, red ripe, S. lycopersicoides IL LA4236A |
21.76 |
| S0836 |
LA4237 |
fruit, red ripe, S. lycopersicoides IL LA4237 |
26.67 |
| S0837 |
LA4238 |
fruit, red ripe, S. lycopersicoides IL LA4238 |
21.87 |
| S0838 |
LA4239 |
fruit, red ripe, S. lycopersicoides IL LA4239 |
24.71 |
| S0839 |
LA4241A |
fruit, red ripe, S. lycopersicoides IL LA4241A |
31.66 |
| S0840 |
LA4241B |
fruit, red ripe, S. lycopersicoides IL LA4241B |
27.33 |
| S0841 |
LA4242A |
fruit, red ripe, S. lycopersicoides IL LA4242A |
24.96 |
| S0842 |
LA4242B |
fruit, red ripe, S. lycopersicoides IL LA4242B |
27.25 |
| S0843 |
LA4242C |
fruit, red ripe, S. lycopersicoides IL LA4242C |
25.63 |
| S0844 |
LA4243 |
fruit, red ripe, S. lycopersicoides IL LA4243 |
25.72 |
| S0845 |
LA4244 |
fruit, red ripe, S. lycopersicoides IL LA4244 |
25.72 |
| S0846 |
LA4245 |
fruit, red ripe, S. lycopersicoides IL LA4245 |
31.87 |
| S0847 |
LA4247 |
fruit, red ripe, S. lycopersicoides IL LA4247 |
26.2 |
| S0848 |
LA4248 |
fruit, red ripe, S. lycopersicoides IL LA4248 |
27.32 |
| S0849 |
LA4249A |
fruit, red ripe, S. lycopersicoides IL LA4249A |
26.36 |
| S0850 |
LA4249B |
fruit, red ripe, S. lycopersicoides IL LA4249B |
26.49 |
| S0851 |
LA4250A |
fruit, red ripe, S. lycopersicoides IL LA4250A |
24.71 |
| S0852 |
LA4250B |
fruit, red ripe, S. lycopersicoides IL LA4250B |
28.15 |
| S0853 |
LA4250C |
fruit, red ripe, S. lycopersicoides IL LA4250C |
25.32 |
| S0854 |
LA4251 |
fruit, red ripe, S. lycopersicoides IL LA4251 |
25.8 |
| S0855 |
LA4252A |
fruit, red ripe, S. lycopersicoides IL LA4252A |
21.61 |
| S0856 |
LA4252B |
fruit, red ripe, S. lycopersicoides IL LA4252B |
22.91 |
| S0857 |
LA4252C |
fruit, red ripe, S. lycopersicoides IL LA4252C |
22.07 |
| S0858 |
LA4252E |
fruit, red ripe, S. lycopersicoides IL LA4252E |
24.59 |
| S0859 |
LA4252F |
fruit, red ripe, S. lycopersicoides IL LA4252F |
22.83 |
| S0860 |
LA4253 |
fruit, red ripe, S. lycopersicoides IL LA4253 |
25.7 |
| S0861 |
LA4254 |
fruit, red ripe, S. lycopersicoides IL LA4254 |
25.91 |
| S0862 |
LA4255 |
fruit, red ripe, S. lycopersicoides IL LA4255 |
24.97 |
| S0863 |
LA4256 |
fruit, red ripe, S. lycopersicoides IL LA4256 |
24.65 |
| S0864 |
LA4257 |
fruit, red ripe, S. lycopersicoides IL LA4257 |
23.85 |
| S0865 |
LA4258 |
fruit, red ripe, S. lycopersicoides IL LA4258 |
30.75 |
| S0866 |
LA4260 |
fruit, red ripe, S. lycopersicoides IL LA4260 |
24.79 |
| S0867 |
LA4262A |
fruit, red ripe, S. lycopersicoides IL LA4262A |
24.69 |
| S0868 |
LA4262B |
fruit, red ripe, S. lycopersicoides IL LA4262B |
26.16 |
| S0869 |
LA4263A |
fruit, red ripe, S. lycopersicoides IL LA4263A |
25.23 |
| S0870 |
LA4263B |
fruit, red ripe, S. lycopersicoides IL LA4263B |
24.91 |
| S0871 |
LA4263C |
fruit, red ripe, S. lycopersicoides IL LA4263C |
24.9 |
| S0872 |
LA4263D |
fruit, red ripe, S. lycopersicoides IL LA4263D |
22.26 |
| S0873 |
LA4264A |
fruit, red ripe, S. lycopersicoides IL LA4264A |
24.85 |
| S0874 |
LA4264B |
fruit, red ripe, S. lycopersicoides IL LA4264B |
26.17 |
| S0875 |
LA4266A |
fruit, red ripe, S. lycopersicoides IL LA4266A |
28.31 |
| S0876 |
LA4266B |
fruit, red ripe, S. lycopersicoides IL LA4266B |
31.82 |
| S0877 |
LA4268 |
fruit, red ripe, S. lycopersicoides IL LA4268 |
28.35 |
| S0878 |
LA4269 |
fruit, red ripe, S. lycopersicoides IL LA4269 |
22.97 |
| S0879 |
LA4270A |
fruit, red ripe, S. lycopersicoides IL LA4270A |
26.23 |
| S0880 |
LA4270B |
fruit, red ripe, S. lycopersicoides IL LA4270B |
26.94 |
| S0881 |
LA4272 |
fruit, red ripe, S. lycopersicoides IL LA4272 |
24.15 |
| S0882 |
LA4273 |
fruit, red ripe, S. lycopersicoides IL LA4273 |
31.48 |
| S0883 |
LA4274 |
fruit, red ripe, S. lycopersicoides IL LA4274 |
28.73 |
| S0884 |
LA4275 |
fruit, red ripe, S. lycopersicoides IL LA4275 |
28.02 |
| S0885 |
LA4276A |
fruit, red ripe, S. lycopersicoides IL LA4276A |
24.98 |
| S0886 |
LA4276B |
fruit, red ripe, S. lycopersicoides IL LA4276B |
25.48 |
| S0887 |
LA4276C |
fruit, red ripe, S. lycopersicoides IL LA4276C |
26.48 |
| S0888 |
LA4276D |
fruit, red ripe, S. lycopersicoides IL LA4276D |
28.26 |
| S0889 |
LA4277 |
fruit, red ripe, S. lycopersicoides IL LA4277 |
28.3 |
| S0890 |
LA4277B |
fruit, red ripe, S. lycopersicoides IL LA4277B |
23.06 |
| S0891 |
LA4277C |
fruit, red ripe, S. lycopersicoides IL LA4277C |
22.87 |
| S0892 |
LA4278A |
fruit, red ripe, S. lycopersicoides IL LA4278A |
29.06 |
| S0893 |
LA4278B |
fruit, red ripe, S. lycopersicoides IL LA4278B |
26.56 |
| S0894 |
LA4279 |
fruit, red ripe, S. lycopersicoides IL LA4279 |
23.94 |
| S0895 |
LA4280 |
fruit, red ripe, S. lycopersicoides IL LA4280 |
24.64 |
| S0896 |
LA4281A |
fruit, red ripe, S. lycopersicoides IL LA4281A |
25.62 |
| S0897 |
LA4281B |
fruit, red ripe, S. lycopersicoides IL LA4281B |
25.95 |
| S0898 |
LA4281C |
fruit, red ripe, S. lycopersicoides IL LA4281C |
25.62 |
| S0899 |
LA4281D |
fruit, red ripe, S. lycopersicoides IL LA4281D |
24.97 |
| S0900 |
LA4281E |
fruit, red ripe, S. lycopersicoides IL LA4281E |
24.08 |
| S0901 |
LA4282A |
fruit, red ripe, S. lycopersicoides IL LA4282A |
24.72 |
| S0902 |
LA4282B |
fruit, red ripe, S. lycopersicoides IL LA4282B |
25.65 |
| S0903 |
LA4282C |
fruit, red ripe, S. lycopersicoides IL LA4282C |
26.17 |
| S0904 |
LA4284 |
fruit, red ripe, S. lycopersicoides IL LA4284 |
25.83 |
| S0905 |
LA4294A |
fruit, red ripe, S. lycopersicoides IL LA4294A |
25.36 |
| S0906 |
LA4294B |
fruit, red ripe, S. lycopersicoides IL LA4294B |
26.48 |
| S0907 |
LA4295 |
fruit, red ripe, S. lycopersicoides IL LA4295 |
29.28 |
| S0908 |
LA4296 |
fruit, red ripe, S. lycopersicoides IL LA4296 |
23.04 |
| S0909 |
LA4297 |
fruit, red ripe, S. lycopersicoides IL LA4297 |
23.71 |
| S0910 |
LA4298 |
fruit, red ripe, S. lycopersicoides IL LA4298 |
26.02 |
| S0911 |
LA4299 |
fruit, red ripe, S. lycopersicoides IL LA4299 |
20.79 |
| S0912 |
LA4300A |
fruit, red ripe, S. lycopersicoides IL LA4300A |
25.4 |
| S0913 |
LA4300B |
fruit, red ripe, S. lycopersicoides IL LA4300B |
20.61 |
| S0914 |
LA4301A |
fruit, red ripe, S. lycopersicoides IL LA4301A |
18.96 |
| S0915 |
LA4303 |
fruit, red ripe, S. lycopersicoides IL LA4303 |
21.04 |
| S0916 |
LA4305 |
fruit, red ripe, S. lycopersicoides IL LA4305 |
29.17 |
| S0917 |
LA4306A |
fruit, red ripe, S. lycopersicoides IL LA4306A |
19.51 |
| S0918 |
LA4306B |
fruit, red ripe, S. lycopersicoides IL LA4306B |
24.76 |
| S0919 |
LA4307 |
fruit, red ripe, S. lycopersicoides IL LA4307 |
22.46 |
| S0920 |
LA4308 |
fruit, red ripe, S. lycopersicoides IL LA4308 |
26.19 |
| S0921 |
LA4308A |
fruit, red ripe, S. lycopersicoides IL LA4308A |
22.56 |
| S0922 |
LA4309 |
fruit, red ripe, S. lycopersicoides IL LA4309 |
20.17 |
| S0923 |
LA4310 |
fruit, red ripe, S. lycopersicoides IL LA4310 |
25.23 |
| S0924 |
LA4311 |
fruit, red ripe, S. lycopersicoides IL LA4311 |
22.81 |
| S0925 |
LA4312A |
fruit, red ripe, S. lycopersicoides IL LA4312A |
26.03 |
| S0926 |
LA4312B |
fruit, red ripe, S. lycopersicoides IL LA4312B |
26.28 |
| S0927 |
LA4313A |
fruit, red ripe, S. lycopersicoides IL LA4313A |
20.02 |
| S0928 |
LA4313B |
fruit, red ripe, S. lycopersicoides IL LA4313B |
22.28 |
Experiment: Transcriptome profiling of ripe fruits of S. pimpinellifolium RILs
| sample ID | genotype | description | RPKM |
|---|
| S0953 |
LA2093 |
fruit, red ripe, S. pimpinellifolium LA2093 |
37.57 |
| S0954 |
NCEBR1 |
fruit, red ripe, S. lycopersicum NCEBR1 |
31.15 |
| S0955 |
RIL-1 |
fruit, red ripe, S. pimpinellifolium RIL-1 |
38.01 |
| S0956 |
RIL-3 |
fruit, red ripe, S. pimpinellifolium RIL-3 |
39.78 |
| S0957 |
RIL-4 |
fruit, red ripe, S. pimpinellifolium RIL-4 |
31.64 |
| S0958 |
RIL-5 |
fruit, red ripe, S. pimpinellifolium RIL-5 |
26.72 |
| S0959 |
RIL-6 |
fruit, red ripe, S. pimpinellifolium RIL-6 |
37.62 |
| S0960 |
RIL-7 |
fruit, red ripe, S. pimpinellifolium RIL-7 |
44.52 |
| S0961 |
RIL-11 |
fruit, red ripe, S. pimpinellifolium RIL-11 |
35.46 |
| S0962 |
RIL-12 |
fruit, red ripe, S. pimpinellifolium RIL-12 |
39.64 |
| S0963 |
RIL-13 |
fruit, red ripe, S. pimpinellifolium RIL-13 |
41.63 |
| S0964 |
RIL-14 |
fruit, red ripe, S. pimpinellifolium RIL-14 |
30.8 |
| S0965 |
RIL-16 |
fruit, red ripe, S. pimpinellifolium RIL-16 |
39.1 |
| S0966 |
RIL-18 |
fruit, red ripe, S. pimpinellifolium RIL-18 |
38.8 |
| S0967 |
RIL-19 |
fruit, red ripe, S. pimpinellifolium RIL-19 |
37.46 |
| S0968 |
RIL-20 |
fruit, red ripe, S. pimpinellifolium RIL-20 |
39.79 |
| S0969 |
RIL-21 |
fruit, red ripe, S. pimpinellifolium RIL-21 |
42.5 |
| S0970 |
RIL-22 |
fruit, red ripe, S. pimpinellifolium RIL-22 |
30.6 |
| S0971 |
RIL-23 |
fruit, red ripe, S. pimpinellifolium RIL-23 |
29.26 |
| S0972 |
RIL-24 |
fruit, red ripe, S. pimpinellifolium RIL-24 |
35.58 |
| S0973 |
RIL-25 |
fruit, red ripe, S. pimpinellifolium RIL-25 |
33.47 |
| S0974 |
RIL-26 |
fruit, red ripe, S. pimpinellifolium RIL-26 |
30.51 |
| S0975 |
RIL-27 |
fruit, red ripe, S. pimpinellifolium RIL-27 |
40.31 |
| S0976 |
RIL-28 |
fruit, red ripe, S. pimpinellifolium RIL-28 |
34.59 |
| S0977 |
RIL-30 |
fruit, red ripe, S. pimpinellifolium RIL-30 |
37.28 |
| S0978 |
RIL-31 |
fruit, red ripe, S. pimpinellifolium RIL-31 |
36.04 |
| S0979 |
RIL-32 |
fruit, red ripe, S. pimpinellifolium RIL-32 |
36.43 |
| S0980 |
RIL-33 |
fruit, red ripe, S. pimpinellifolium RIL-33 |
44.75 |
| S0981 |
RIL-34 |
fruit, red ripe, S. pimpinellifolium RIL-34 |
33.88 |
| S0982 |
RIL-35 |
fruit, red ripe, S. pimpinellifolium RIL-35 |
34.17 |
| S0983 |
RIL-37 |
fruit, red ripe, S. pimpinellifolium RIL-37 |
32.2 |
| S0984 |
RIL-38 |
fruit, red ripe, S. pimpinellifolium RIL-38 |
35.36 |
| S0985 |
RIL-39 |
fruit, red ripe, S. pimpinellifolium RIL-39 |
39.19 |
| S0986 |
RIL-41 |
fruit, red ripe, S. pimpinellifolium RIL-41 |
32.65 |
| S0987 |
RIL-43 |
fruit, red ripe, S. pimpinellifolium RIL-43 |
40.5 |
| S0988 |
RIL-45 |
fruit, red ripe, S. pimpinellifolium RIL-45 |
33.65 |
| S0989 |
RIL-47 |
fruit, red ripe, S. pimpinellifolium RIL-47 |
37.18 |
| S0990 |
RIL-48 |
fruit, red ripe, S. pimpinellifolium RIL-48 |
31.5 |
| S0991 |
RIL-49 |
fruit, red ripe, S. pimpinellifolium RIL-49 |
39.77 |
| S0992 |
RIL-50 |
fruit, red ripe, S. pimpinellifolium RIL-50 |
39.94 |
| S0993 |
RIL-52 |
fruit, red ripe, S. pimpinellifolium RIL-52 |
37.56 |
| S0994 |
RIL-53 |
fruit, red ripe, S. pimpinellifolium RIL-53 |
34.05 |
| S0995 |
RIL-54 |
fruit, red ripe, S. pimpinellifolium RIL-54 |
30.1 |
| S0996 |
RIL-55 |
fruit, red ripe, S. pimpinellifolium RIL-55 |
30.44 |
| S0997 |
RIL-56 |
fruit, red ripe, S. pimpinellifolium RIL-56 |
39.17 |
| S0998 |
RIL-57 |
fruit, red ripe, S. pimpinellifolium RIL-57 |
37.52 |
| S0999 |
RIL-58 |
fruit, red ripe, S. pimpinellifolium RIL-58 |
34.44 |
| S1000 |
RIL-62 |
fruit, red ripe, S. pimpinellifolium RIL-62 |
32.81 |
| S1001 |
RIL-63 |
fruit, red ripe, S. pimpinellifolium RIL-63 |
36.94 |
| S1002 |
RIL-65 |
fruit, red ripe, S. pimpinellifolium RIL-65 |
34.73 |
| S1003 |
RIL-66 |
fruit, red ripe, S. pimpinellifolium RIL-66 |
39.96 |
| S1004 |
RIL-67 |
fruit, red ripe, S. pimpinellifolium RIL-67 |
30.22 |
| S1005 |
RIL-68 |
fruit, red ripe, S. pimpinellifolium RIL-68 |
34.79 |
| S1006 |
RIL-69 |
fruit, red ripe, S. pimpinellifolium RIL-69 |
39.22 |
| S1007 |
RIL-71 |
fruit, red ripe, S. pimpinellifolium RIL-71 |
37.62 |
| S1008 |
RIL-72 |
fruit, red ripe, S. pimpinellifolium RIL-72 |
40.98 |
| S1009 |
RIL-73 |
fruit, red ripe, S. pimpinellifolium RIL-73 |
41.05 |
| S1010 |
RIL-75 |
fruit, red ripe, S. pimpinellifolium RIL-75 |
29.03 |
| S1011 |
RIL-76 |
fruit, red ripe, S. pimpinellifolium RIL-76 |
34.91 |
| S1012 |
RIL-77 |
fruit, red ripe, S. pimpinellifolium RIL-77 |
37.65 |
| S1013 |
RIL-78 |
fruit, red ripe, S. pimpinellifolium RIL-78 |
36.02 |
| S1014 |
RIL-79 |
fruit, red ripe, S. pimpinellifolium RIL-79 |
35.83 |
| S1015 |
RIL-80 |
fruit, red ripe, S. pimpinellifolium RIL-80 |
36.77 |
| S1016 |
RIL-81 |
fruit, red ripe, S. pimpinellifolium RIL-81 |
27.79 |
| S1017 |
RIL-84 |
fruit, red ripe, S. pimpinellifolium RIL-84 |
36.51 |
| S1018 |
RIL-85 |
fruit, red ripe, S. pimpinellifolium RIL-85 |
33.97 |
| S1019 |
RIL-88 |
fruit, red ripe, S. pimpinellifolium RIL-88 |
33.73 |
| S1020 |
RIL-90 |
fruit, red ripe, S. pimpinellifolium RIL-90 |
35.28 |
| S1021 |
RIL-91 |
fruit, red ripe, S. pimpinellifolium RIL-91 |
37.12 |
| S1022 |
RIL-95 |
fruit, red ripe, S. pimpinellifolium RIL-95 |
31.98 |
| S1023 |
RIL-96 |
fruit, red ripe, S. pimpinellifolium RIL-96 |
38.32 |
| S1024 |
RIL-97 |
fruit, red ripe, S. pimpinellifolium RIL-97 |
37.22 |
| S1025 |
RIL-98 |
fruit, red ripe, S. pimpinellifolium RIL-98 |
34.74 |
| S1026 |
RIL-99 |
fruit, red ripe, S. pimpinellifolium RIL-99 |
39.74 |
| S1027 |
RIL-100 |
fruit, red ripe, S. pimpinellifolium RIL-100 |
36.78 |
| S1028 |
RIL-101 |
fruit, red ripe, S. pimpinellifolium RIL-101 |
40.21 |
| S1029 |
RIL-102 |
fruit, red ripe, S. pimpinellifolium RIL-102 |
33.5 |
| S1030 |
RIL-103 |
fruit, red ripe, S. pimpinellifolium RIL-103 |
33.96 |
| S1031 |
RIL-105 |
fruit, red ripe, S. pimpinellifolium RIL-105 |
42.15 |
| S1032 |
RIL-107 |
fruit, red ripe, S. pimpinellifolium RIL-107 |
34.49 |
| S1033 |
RIL-108 |
fruit, red ripe, S. pimpinellifolium RIL-108 |
35.89 |
| S1034 |
RIL-109 |
fruit, red ripe, S. pimpinellifolium RIL-109 |
40.96 |
| S1035 |
RIL-111 |
fruit, red ripe, S. pimpinellifolium RIL-111 |
31.52 |
| S1036 |
RIL-112 |
fruit, red ripe, S. pimpinellifolium RIL-112 |
39.92 |
| S1037 |
RIL-113 |
fruit, red ripe, S. pimpinellifolium RIL-113 |
39.93 |
| S1038 |
RIL-114 |
fruit, red ripe, S. pimpinellifolium RIL-114 |
33.28 |
| S1039 |
RIL-115 |
fruit, red ripe, S. pimpinellifolium RIL-115 |
35.22 |
| S1040 |
RIL-116 |
fruit, red ripe, S. pimpinellifolium RIL-116 |
32.02 |
| S1041 |
RIL-117 |
fruit, red ripe, S. pimpinellifolium RIL-117 |
27.67 |
| S1042 |
RIL-118 |
fruit, red ripe, S. pimpinellifolium RIL-118 |
36.08 |
| S1043 |
RIL-120 |
fruit, red ripe, S. pimpinellifolium RIL-120 |
38.79 |
| S1044 |
RIL-121 |
fruit, red ripe, S. pimpinellifolium RIL-121 |
33.66 |
| S1045 |
RIL-122 |
fruit, red ripe, S. pimpinellifolium RIL-122 |
32.44 |
| S1046 |
RIL-123 |
fruit, red ripe, S. pimpinellifolium RIL-123 |
34.64 |
| S1047 |
RIL-124 |
fruit, red ripe, S. pimpinellifolium RIL-124 |
38.67 |
| S1048 |
RIL-125 |
fruit, red ripe, S. pimpinellifolium RIL-125 |
32.12 |
| S1049 |
RIL-126 |
fruit, red ripe, S. pimpinellifolium RIL-126 |
31.94 |
| S1050 |
RIL-128 |
fruit, red ripe, S. pimpinellifolium RIL-128 |
33.15 |
| S1051 |
RIL-129 |
fruit, red ripe, S. pimpinellifolium RIL-129 |
31.23 |
| S1052 |
RIL-130 |
fruit, red ripe, S. pimpinellifolium RIL-130 |
31.36 |
| S1053 |
RIL-131 |
fruit, red ripe, S. pimpinellifolium RIL-131 |
40.98 |
| S1054 |
RIL-132 |
fruit, red ripe, S. pimpinellifolium RIL-132 |
30.09 |
| S1055 |
RIL-133 |
fruit, red ripe, S. pimpinellifolium RIL-133 |
45.23 |
| S1056 |
RIL-134 |
fruit, red ripe, S. pimpinellifolium RIL-134 |
34.57 |
| S1057 |
RIL-135 |
fruit, red ripe, S. pimpinellifolium RIL-135 |
33.14 |
| S1058 |
RIL-137 |
fruit, red ripe, S. pimpinellifolium RIL-137 |
34.05 |
| S1059 |
RIL-139 |
fruit, red ripe, S. pimpinellifolium RIL-139 |
32.41 |
| S1060 |
RIL-140 |
fruit, red ripe, S. pimpinellifolium RIL-140 |
29.95 |
| S1061 |
RIL-142 |
fruit, red ripe, S. pimpinellifolium RIL-142 |
35.85 |
| S1062 |
RIL-143 |
fruit, red ripe, S. pimpinellifolium RIL-143 |
30.96 |
| S1063 |
RIL-144 |
fruit, red ripe, S. pimpinellifolium RIL-144 |
37.03 |
| S1064 |
RIL-145 |
fruit, red ripe, S. pimpinellifolium RIL-145 |
33.9 |
| S1065 |
RIL-146 |
fruit, red ripe, S. pimpinellifolium RIL-146 |
34.16 |
| S1066 |
RIL-147 |
fruit, red ripe, S. pimpinellifolium RIL-147 |
33.48 |
| S1067 |
RIL-148 |
fruit, red ripe, S. pimpinellifolium RIL-148 |
28.61 |
| S1068 |
RIL-149 |
fruit, red ripe, S. pimpinellifolium RIL-149 |
32.56 |
| S1069 |
RIL-150 |
fruit, red ripe, S. pimpinellifolium RIL-150 |
39.53 |
| S1070 |
RIL-151 |
fruit, red ripe, S. pimpinellifolium RIL-151 |
33.05 |
| S1071 |
RIL-152 |
fruit, red ripe, S. pimpinellifolium RIL-152 |
33.94 |
| S1072 |
RIL-153 |
fruit, red ripe, S. pimpinellifolium RIL-153 |
30.02 |
| S1073 |
RIL-154 |
fruit, red ripe, S. pimpinellifolium RIL-154 |
40.73 |
| S1074 |
RIL-155 |
fruit, red ripe, S. pimpinellifolium RIL-155 |
41.2 |
| S1075 |
RIL-156 |
fruit, red ripe, S. pimpinellifolium RIL-156 |
38.94 |
| S1076 |
RIL-159 |
fruit, red ripe, S. pimpinellifolium RIL-159 |
39.86 |
| S1077 |
RIL-160 |
fruit, red ripe, S. pimpinellifolium RIL-160 |
32.95 |
| S1078 |
RIL-161 |
fruit, red ripe, S. pimpinellifolium RIL-161 |
41.38 |
| S1079 |
RIL-162 |
fruit, red ripe, S. pimpinellifolium RIL-162 |
37.34 |
| S1080 |
RIL-164 |
fruit, red ripe, S. pimpinellifolium RIL-164 |
33.5 |
| S1081 |
RIL-165 |
fruit, red ripe, S. pimpinellifolium RIL-165 |
42.77 |
| S1082 |
RIL-167 |
fruit, red ripe, S. pimpinellifolium RIL-167 |
32.86 |
| S1083 |
RIL-168 |
fruit, red ripe, S. pimpinellifolium RIL-168 |
42.72 |
| S1084 |
RIL-169 |
fruit, red ripe, S. pimpinellifolium RIL-169 |
38.78 |
| S1085 |
RIL-171 |
fruit, red ripe, S. pimpinellifolium RIL-171 |
37.88 |
| S1086 |
RIL-172 |
fruit, red ripe, S. pimpinellifolium RIL-172 |
35.28 |
Experiment: Transcriptome profiling of fruit of cultivated and wild tomatoes
| sample ID | genotype | description | RPKM |
|---|
| S1107 |
LA0816 (VF-145) |
LA0816 immature green fruit |
20.41 |
| S1108 |
LA0816 (VF-145) |
LA0816 mature green fruit |
21.45 |
| S1109 |
LA0816 (VF-145) |
LA0816 breaker fruit |
23.26 |
| S1110 |
LA0816 (VF-145) |
LA0816 ripe fruit |
22.63 |
| S1111 |
LA1563 |
LA1563 immature green fruit |
20.3 |
| S1112 |
LA1563 |
LA1563 mature green fruit |
21.23 |
| S1113 |
LA1563 |
LA1563 breaker fruit |
24.64 |
| S1114 |
LA1563 |
LA1563 ripe fruit |
22.43 |
| S1115 |
BD-MP |
BD-MP immature green fruit |
20.28 |
| S1116 |
BD-MP |
BD-MP mature green fruit |
23.42 |
| S1117 |
BD-MP |
BD-MP breaker fruit |
26.14 |
| S1118 |
BD-MP |
BD-MP ripe fruit |
22.75 |
| S1119 |
BD-MT |
BD-MT immature green fruit |
21.32 |
| S1120 |
BD-MT |
BD-MT mature green fruit |
24.05 |
| S1121 |
BD-MT |
BD-MT breaker fruit |
42.95 |
| S1122 |
BD-MT |
BD-MT ripe fruit |
56.81 |
| S1123 |
LA1306 |
LA1306 immature green fruit |
27.35 |
| S1124 |
LA1306 |
LA1306 mature green fruit |
33.61 |
| S1125 |
LA1306 |
LA1306 breaker fruit |
35.88 |
| S1126 |
LA1306 |
LA1306 ripe fruit |
26.84 |
| S1127 |
LA1412 |
LA1412 immature green fruit |
32.74 |
| S1128 |
LA1412 |
LA1412 mature green fruit |
35.4 |
| S1129 |
LA1412 |
LA1412 breaker fruit |
38.29 |
| S1130 |
LA1412 |
LA1412 ripe fruit |
39.61 |
| S1131 |
LA1586 |
LA1586 immature green fruit |
23.42 |
| S1132 |
LA1586 |
LA1586 mature green fruit |
34.32 |
| S1133 |
LA1586 |
LA1586 breaker fruit |
30.15 |
| S1134 |
LA1586 |
LA1586 ripe fruit |
26.79 |
| S1135 |
LA1589 |
LA1589 immature green fruit |
26.94 |
| S1136 |
LA1589 |
LA1589 mature green fruit |
32.96 |
| S1137 |
LA1589 |
LA1589 breaker fruit |
34.48 |
| S1138 |
LA1589 |
LA1589 ripe fruit |
21.8 |
| S1139 |
LA1028 |
LA1028 immature green fruit |
47.09 |
| S1141 |
LA1028 |
LA1028 breaker fruit |
26.99 |
| S1142 |
LA1028 |
LA1028 ripe fruit |
36.85 |
| S1143 |
LA1318 |
LA1318 immature green fruit |
35.27 |
| S1144 |
LA1318 |
LA1318 mature green fruit |
33.38 |
| S1145 |
LA1318 |
LA1318 breaker fruit |
27.14 |
| S1146 |
LA1318 |
LA1318 ripe fruit |
26.41 |
| S1147 |
BD-732 |
BD-732 immature green fruit |
32.54 |
| S1148 |
BD-732 |
BD-732 mature green fruit |
45.6 |
| S1149 |
BD-732 |
BD-732 breaker fruit |
39.82 |
| S1150 |
BD-732 |
BD-732 ripe fruit |
31.83 |
| S1151 |
LA0407 |
LA0407 immature green fruit |
38.11 |
| S1152 |
LA0407 |
LA0407 mature green fruit |
38.14 |
| S1153 |
LA0407 |
LA0407 breaker fruit |
28.78 |
| S1154 |
LA0407 |
LA0407 ripe fruit |
26.25 |
| S1155 |
LA1777 |
LA1777 immature green fruit |
34.83 |
| S1156 |
LA1777 |
LA1777 mature green fruit |
29.18 |
| S1157 |
LA1777 |
LA1777 breaker fruit |
33.28 |
| S1158 |
LA1777 |
LA1777 ripe fruit |
52.15 |
| S1159 |
LA0716 |
LA0716 immature green fruit |
36.78 |
| S1160 |
LA0716 |
LA0716 mature green fruit |
45.32 |
| S1161 |
LA0716 |
LA0716 breaker fruit |
32.26 |
| S1162 |
LA0716 |
LA0716 ripe fruit |
36.23 |
| S1163 |
PI126431 |
PI126431 immature green fruit |
35.78 |
| S1164 |
PI126431 |
PI126431 mature green fruit |
38.9 |
| S1165 |
PI126431 |
PI126431 breaker fruit |
40.99 |
| S1166 |
PI126431 |
PI126431 ripe fruit |
24.38 |
| S1167 |
PI126926 |
PI126926 immature green fruit |
32.03 |
| S1168 |
PI126926 |
PI126926 mature green fruit |
39.58 |
| S1169 |
PI126926 |
PI126926 breaker fruit |
28.45 |
| S1170 |
PI126926 |
PI126926 ripe fruit |
24.66 |
| S1171 |
LA1584 |
LA1584 ripe fruit |
37.22 |
| S1172 |
LA2173 |
LA2173 ripe fruit |
36.56 |
| S1173 |
LA1301 |
LA1301 ripe fruit |
38.56 |
| S1174 |
LA1335 |
LA1335 ripe fruit |
30.27 |
| S1175 |
LA1371 |
LA1371 ripe fruit |
38.77 |
| S1176 |
LA1521 |
LA1521 ripe fruit |
34.03 |
| S1177 |
LA1659 |
LA1659 ripe fruit |
30.03 |
| S1178 |
LA0722 |
LA0722 ripe fruit |
29.93 |
| S1179 |
LA1547 |
LA1547 ripe fruit |
31.69 |
| S1180 |
LA3123 |
LA3123 ripe fruit |
38.06 |
| S1181 |
LA2096 |
LA2096 ripe fruit |
30.94 |
| S1182 |
LA1246 |
LA1246 ripe fruit |
36.34 |
| S1183 |
LA1259 |
LA1259 ripe fruit |
37.24 |
| S1184 |
LA2093 |
LA2093 ripe fruit |
25.12 |
| S1185 |
LA0418 |
LA0418 ripe fruit |
30.13 |
| S1186 |
LA2850 |
LA2850 ripe fruit |
33.14 |
| S1187 |
LA1043 |
LA1043 ripe fruit |
25.96 |
| S1188 |
LA0438 |
LA0438 ripe fruit |
40.58 |
| S1189 |
LA0532 |
LA0532 ripe fruit |
40.36 |
| S1190 |
LA1044 |
LA1044 ripe fruit |
27.73 |
| S1191 |
LA1452 |
LA1452 ripe fruit |
29.25 |
| S1192 |
LA0528 |
LA0528 ripe fruit |
42.3 |
| S1193 |
LA0530 |
LA0530 ripe fruit |
37.83 |
| S1194 |
LA0480A |
LA0480A ripe fruit |
34.56 |
| S1195 |
LA0521 |
LA0521 ripe fruit |
38.44 |
| S1196 |
LA0422 |
LA0422 ripe fruit |
23.31 |
| S1197 |
LA0529 |
LA0529 ripe fruit |
31.97 |
| S1198 |
LA1039 |
LA1039 ripe fruit |
21.06 |
| S1199 |
LA1042 |
LA1042 ripe fruit |
22.95 |
| S1200 |
LA1407 |
LA1407 ripe fruit |
41.55 |
| S1201 |
LA1035 |
LA1035 ripe fruit |
20.27 |
|
|
