Solyc09g005810 expression
Experiment: Transcriptome profiling of pennellii ILs
| sample ID | genotype | description | RPKM |
|---|
| S0001 |
M82 |
fruit, red ripe, M82 |
51 |
| S0002 |
1-1 |
fruit, red ripe, S. pennellii IL1-1 |
43.95 |
| S0003 |
1-1-2 |
fruit, red ripe, S. pennellii IL1-1-2 |
47.08 |
| S0004 |
1-1-3 |
fruit, red ripe, S. pennellii IL1-1-3 |
41.69 |
| S0005 |
1-2 |
fruit, red ripe, S. pennellii IL1-2 |
47.36 |
| S0006 |
1-3 |
fruit, red ripe, S. pennellii IL1-3 |
43.71 |
| S0007 |
1-4 |
fruit, red ripe, S. pennellii IL1-4 |
45.11 |
| S0008 |
1-4-18 |
fruit, red ripe, S. pennellii IL1-4-18 |
43.45 |
| S0009 |
2-1 |
fruit, red ripe, S. pennellii IL2-1 |
47.71 |
| S0010 |
2-1-1 |
fruit, red ripe, S. pennellii IL2-1-1 |
52.75 |
| S0011 |
2-2 |
fruit, red ripe, S. pennellii IL2-2 |
42.09 |
| S0012 |
2-3 |
fruit, red ripe, S. pennellii IL2-3 |
47.96 |
| S0013 |
2-4 |
fruit, red ripe, S. pennellii IL2-4 |
45.31 |
| S0014 |
2-5 |
fruit, red ripe, S. pennellii IL2-5 |
36.83 |
| S0015 |
2-6 |
fruit, red ripe, S. pennellii IL2-6 |
39.69 |
| S0016 |
2-6-5 |
fruit, red ripe, S. pennellii IL2-6-5 |
41.05 |
| S0017 |
3-1 |
fruit, red ripe, S. pennellii IL3-1 |
40.23 |
| S0018 |
3-2 |
fruit, red ripe, S. pennellii IL3-2 |
58.06 |
| S0020 |
3-4 |
fruit, red ripe, S. pennellii IL3-4 |
40.29 |
| S0021 |
3-5 |
fruit, red ripe, S. pennellii IL3-5 |
47.03 |
| S0022 |
4-1 |
fruit, red ripe, S. pennellii IL4-1 |
35.75 |
| S0023 |
4-1-1 |
fruit, red ripe, S. pennellii IL4-1-1 |
45.55 |
| S0024 |
4-2 |
fruit, red ripe, S. pennellii IL4-2 |
52.65 |
| S0025 |
4-3 |
fruit, red ripe, S. pennellii IL4-3 |
50.32 |
| S0026 |
4-3-2 |
fruit, red ripe, S. pennellii IL4-3-2 |
41.8 |
| S0027 |
4-4 |
fruit, red ripe, S. pennellii IL4-4 |
33.41 |
| S0028 |
5-1 |
fruit, red ripe, S. pennellii IL5-1 |
40.78 |
| S0029 |
5-2 |
fruit, red ripe, S. pennellii IL5-2 |
41.98 |
| S0030 |
5-3 |
fruit, red ripe, S. pennellii IL5-3 |
33.38 |
| S0031 |
5-4 |
fruit, red ripe, S. pennellii IL5-4 |
29.37 |
| S0032 |
5-5 |
fruit, red ripe, S. pennellii IL5-5 |
50.41 |
| S0034 |
6-2 |
fruit, red ripe, S. pennellii IL6-2 |
53.2 |
| S0035 |
6-2-2 |
fruit, red ripe, S. pennellii IL6-2-2 |
28.78 |
| S0036 |
6-3 |
fruit, red ripe, S. pennellii IL6-3 |
34.33 |
| S0037 |
6-4 |
fruit, red ripe, S. pennellii IL6-4 |
45.44 |
| S0038 |
7-1 |
fruit, red ripe, S. pennellii IL7-1 |
39.99 |
| S0039 |
7-2 |
fruit, red ripe, S. pennellii IL7-2 |
37.52 |
| S0040 |
7-3 |
fruit, red ripe, S. pennellii IL7-3 |
43.87 |
| S0041 |
7-4 |
fruit, red ripe, S. pennellii IL7-4 |
43.89 |
| S0042 |
7-4-1 |
fruit, red ripe, S. pennellii IL7-4-1 |
43.39 |
| S0043 |
7-5 |
fruit, red ripe, S. pennellii IL7-5 |
44.44 |
| S0044 |
7-5-5 |
fruit, red ripe, S. pennellii IL7-5-5 |
46.59 |
| S0045 |
8-1 |
fruit, red ripe, S. pennellii IL8-1 |
42.74 |
| S0046 |
8-1-1 |
fruit, red ripe, S. pennellii IL8-1-1 |
48.07 |
| S0047 |
8-1-5 |
fruit, red ripe, S. pennellii IL8-1-5 |
35.97 |
| S0048 |
8-2 |
fruit, red ripe, S. pennellii IL8-2 |
37.78 |
| S0049 |
8-2-1 |
fruit, red ripe, S. pennellii IL8-2-1 |
41.67 |
| S0050 |
8-3 |
fruit, red ripe, S. pennellii IL8-3 |
40.8 |
| S0051 |
8-3-1 |
fruit, red ripe, S. pennellii IL8-3-1 |
40.35 |
| S0052 |
9-1 |
fruit, red ripe, S. pennellii IL9-1 |
36.54 |
| S0053 |
9-1-2 |
fruit, red ripe, S. pennellii IL9-1-2 |
42.51 |
| S0054 |
9-1-3 |
fruit, red ripe, S. pennellii IL9-1-3 |
28.29 |
| S0055 |
9-2 |
fruit, red ripe, S. pennellii IL9-2 |
46.16 |
| S0056 |
9-2-5 |
fruit, red ripe, S. pennellii IL9-2-5 |
53.32 |
| S0057 |
9-2-6 |
fruit, red ripe, S. pennellii IL9-2-6 |
45.04 |
| S0058 |
9-3 |
fruit, red ripe, S. pennellii IL9-3 |
40.36 |
| S0059 |
9-3-1 |
fruit, red ripe, S. pennellii IL9-3-1 |
37.94 |
| S0060 |
9-3-2 |
fruit, red ripe, S. pennellii IL9-3-2 |
36.71 |
| S0061 |
10-1 |
fruit, red ripe, S. pennellii IL10-1 |
44.96 |
| S0062 |
10-1-1 |
fruit, red ripe, S. pennellii IL10-1-1 |
44.82 |
| S0063 |
10-2 |
fruit, red ripe, S. pennellii IL10-2 |
42.19 |
| S0064 |
10-2-2 |
fruit, red ripe, S. pennellii IL10-2-2 |
45.18 |
| S0065 |
10-3 |
fruit, red ripe, S. pennellii IL10-3 |
50.97 |
| S0066 |
11-1 |
fruit, red ripe, S. pennellii IL11-1 |
35.06 |
| S0067 |
11-2 |
fruit, red ripe, S. pennellii IL11-2 |
39.47 |
| S0068 |
11-3 |
fruit, red ripe, S. pennellii IL11-3 |
54.59 |
| S0069 |
11-4 |
fruit, red ripe, S. pennellii IL11-4 |
46.34 |
| S0070 |
11-4-1 |
fruit, red ripe, S. pennellii IL11-4-1 |
46.74 |
| S0071 |
12-1 |
fruit, red ripe, S. pennellii IL12-1 |
34.12 |
| S0072 |
12-1-1 |
fruit, red ripe, S. pennellii IL12-1-1 |
38.44 |
| S0073 |
12-2 |
fruit, red ripe, S. pennellii IL12-2 |
38.31 |
| S0074 |
12-3 |
fruit, red ripe, S. pennellii IL12-3 |
39.83 |
| S0075 |
12-3-1 |
fruit, red ripe, S. pennellii IL12-3-1 |
37.84 |
| S0076 |
12-4 |
fruit, red ripe, S. pennellii IL12-4 |
37.86 |
| S0077 |
12-4-1 |
fruit, red ripe, S. pennellii IL12-4-1 |
37.5 |
Experiment: Transcriptome analysis of various tissues in tomato cultivar Heinz and the wild relative Solanum pimpinellifolium
| sample ID | genotype | description | RPKM |
|---|
| S0584 |
Heinz |
Heinz unopened flower buds |
54.19 |
| S0585 |
Heinz |
Heinz fully opened flowers |
34.92 |
| S0586 |
Heinz |
Heinz 1 cm fruits |
72.37 |
| S0587 |
Heinz |
Heinz 2 cm fruits |
58.35 |
| S0588 |
Heinz |
Heinz 3 cm fruits |
38.01 |
| S0589 |
Heinz |
Heinz mature green fruits |
47.92 |
| S0590 |
Heinz |
Heinz breaker fruits |
44.77 |
| S0591 |
Heinz |
Heinz breaker+10 fruits |
43.7 |
| S0592 |
Heinz |
Heinz roots |
66.16 |
| S0593 |
Heinz |
Heinz leaves |
50 |
| S0594 |
|
pimpinellifolium immature green fruits |
40.37 |
| S0595 |
|
pimpinellifolium breaker fruits |
35.07 |
| S0596 |
|
pimpinellifolium breaker+5 fruits |
26.38 |
| S0597 |
|
pimpinellifolium leaves |
14.55 |
Experiment: Transcriptome profiling of young flower buds of WT, sun, ovate and fs8.1 NILs in the LA1589 background
| sample ID | genotype | description | RPKM |
|---|
| S0929 |
LA1589 |
LA1589 young flower buds at 4 days post-initiation of floral meristem |
31.12 |
| S0930 |
LA1589 |
LA1589 young flower buds at 6 days post-initiation of floral meristem |
30.72 |
| S0931 |
LA1589 |
LA1589 young flower buds at 8 days post-initiation of floral meristem |
32.47 |
| S0932 |
LA1589 |
LA1589 young flower buds at 10 days post-initiation of floral meristem |
33.99 |
| S0933 |
LA1589 |
LA1589 young flower buds at 13 days post-initiation of floral meristem |
43.69 |
| S0934 |
LA1589 |
LA1589 young flower buds at 16 days post-initiation of floral meristem |
41.11 |
| S0935 |
sun NIL in the LA1589 background |
sun young flower buds at 4 days post-initiation of floral meristem |
29.65 |
| S0936 |
sun NIL in the LA1589 background |
sun young flower buds at 6 days post-initiation of floral meristem |
31.12 |
| S0937 |
sun NIL in the LA1589 background |
sun young flower buds at 8 days post-initiation of floral meristem |
33.93 |
| S0938 |
sun NIL in the LA1589 background |
sun young flower buds at 10 days post-initiation of floral meristem |
34.34 |
| S0939 |
sun NIL in the LA1589 background |
sun young flower buds at 13 days post-initiation of floral meristem |
41.88 |
| S0940 |
sun NIL in the LA1589 background |
sun young flower buds at 16 days post-initiation of floral meristem |
43.67 |
| S0941 |
ovate NIL in the LA1589 background |
ovate young flower buds at 4 days post-initiation of floral meristem |
27.96 |
| S0942 |
ovate NIL in the LA1589 background |
ovate young flower buds at 6 days post-initiation of floral meristem |
32 |
| S0943 |
ovate NIL in the LA1589 background |
ovate young flower buds at 8 days post-initiation of floral meristem |
37.38 |
| S0944 |
ovate NIL in the LA1589 background |
ovate young flower buds at 10 days post-initiation of floral meristem |
33.03 |
| S0945 |
ovate NIL in the LA1589 background |
ovate young flower buds at 13 days post-initiation of floral meristem |
39.22 |
| S0946 |
ovate NIL in the LA1589 background |
ovate young flower buds at 16 days post-initiation of floral meristem |
44.26 |
| S0947 |
fs8.1 NIL in the LA1589 background |
fs8.1 young flower buds at 4 days post-initiation of floral meristem |
33.18 |
| S0948 |
fs8.1 NIL in the LA1589 background |
fs8.1 young flower buds at 6 days post-initiation of floral meristem |
32.1 |
| S0949 |
fs8.1 NIL in the LA1589 background |
fs8.1 young flower buds at 8 days post-initiation of floral meristem |
32.86 |
| S0950 |
fs8.1 NIL in the LA1589 background |
fs8.1 young flower buds at 10 days post-initiation of floral meristem |
35.68 |
| S0951 |
fs8.1 NIL in the LA1589 background |
fs8.1 young flower buds at 13 days post-initiation of floral meristem |
42.55 |
| S0952 |
fs8.1 NIL in the LA1589 background |
fs8.1 young flower buds at 16 days post-initiation of floral meristem |
41.18 |
Experiment: Transcriptome analysis of various tissues in wild species S. pimpinellifolium, LA1589
| sample ID | genotype | description | RPKM |
|---|
| S0608 |
LA1589 |
anthesis flowers (0DPA) |
12.57 |
| S0609 |
LA1589 |
10 days post anthesis fruit (10 DPA1) |
26.81 |
| S0610 |
LA1589 |
10 days post anthesis fruit 2 (10 DPA2) |
31.58 |
| S0611 |
LA1589 |
20 days post anthesis fruit (20DPA) |
28.83 |
| S0612 |
LA1589 |
rippening fruit (33DPA) |
12.15 |
| S0613 |
LA1589 |
cotyledons (COTYL) |
17.67 |
| S0614 |
LA1589 |
hypocotyl (HYPO) |
35.68 |
| S0615 |
LA1589 |
vegitative meristems (MERI) |
26.35 |
| S0616 |
LA1589 |
mature leaves (ML) |
14.07 |
| S0617 |
LA1589 |
whole root (ROOT) |
28.23 |
| S0618 |
LA1589 |
young flower buds (YFB) |
15.09 |
| S0619 |
LA1589 |
young leaves (YL) |
14.22 |
Experiment: Transcriptome sequencing of tomato leaves treated with different bacteria and PAMPs
| sample ID | genotype | description | RPKM |
|---|
| S0620 |
Rio Grande prf3 (deletion in Prf) |
mock PAMPs 30 min |
15.27 |
| S0621 |
Rio Grande prf3 (deletion in Prf) |
cold shock protein 22 (csp22) 30 min |
11.13 |
| S0622 |
Rio Grande prf3 (deletion in Prf) |
flagellin 22 (flg22) 30 min |
15.46 |
| S0623 |
Rio Grande prf3 (deletion in Prf) |
flagellin II-28 (flgII-28) 30 min |
12.69 |
| S0624 |
Rio Grande prf3 (deletion in Prf) |
Lipopolysaccharides (LPS) 30 min |
13.97 |
| S0625 |
Rio Grande prf3 (deletion in Prf) |
Peptidoglycan (PGN) 30 min |
12.63 |
| S0626 |
Rio Grande prf3 (deletion in Prf) |
mock PAMPs 6h |
34.36 |
| S0627 |
Rio Grande prf3 (deletion in Prf) |
cold shock protein 22 (csp22) 6 h |
37.97 |
| S0628 |
Rio Grande prf3 (deletion in Prf) |
flagellin 22 (flg22) 6h |
34.55 |
| S0629 |
Rio Grande prf3 (deletion in Prf) |
flagellin II-28 (flgII-28) 6h |
37.34 |
| S0630 |
Rio Grande prf3 (deletion in Prf) |
Lipopolysaccharides (LPS) 6 h |
35.93 |
| S0631 |
Rio Grande prf3 (deletion in Prf) |
Peptidoglycan (PGN) 6h |
33.7 |
| S0632 |
Rio Grande prf3 (deletion in Prf) |
mock bacteria 30 min |
15.66 |
| S0633 |
Rio Grande prf3 (deletion in Prf) |
DC3000 30 min |
15.38 |
| S0634 |
Rio Grande prf3 (deletion in Prf) |
DC3000ΔhrcQ-U 30 min |
12.89 |
| S0635 |
Rio Grande prf3 (deletion in Prf) |
DC3000ΔhrcQ-UΔfliC 30 min |
13.12 |
| S0636 |
Rio Grande prf3 (deletion in Prf) |
DC3000Δ28 30 min |
16.88 |
| S0637 |
Rio Grande prf3 (deletion in Prf) |
DC3000ΔAvrPtoΔAvrPtoB 30 min |
14.66 |
| S0638 |
Rio Grande prf3 (deletion in Prf) |
Pseudomonas fluorescens 30 min |
14.34 |
| S0639 |
Rio Grande prf3 (deletion in Prf) |
Pseudomonas putida 30 min |
15.62 |
| S0640 |
Rio Grande prf3 (deletion in Prf) |
Agrobacterium tumefaciens 30 min |
15.27 |
| S0641 |
Rio Grande prf3 (deletion in Prf) |
mock bacteria 6 h |
30.91 |
| S0642 |
Rio Grande prf3 (deletion in Prf) |
DC3000 6 h |
33.36 |
| S0643 |
Rio Grande prf3 (deletion in Prf) |
DC3000ΔhrcQ-U 6 h |
33.98 |
| S0644 |
Rio Grande prf3 (deletion in Prf) |
DC3000ΔhrcQ-UΔfliC 6 h |
34.22 |
| S0645 |
Rio Grande prf3 (deletion in Prf) |
DC3000Δ28 6 h |
31.64 |
| S0646 |
Rio Grande prf3 (deletion in Prf) |
DC3000ΔAvrPtoΔAvrPtoB 6 h |
32.24 |
| S0647 |
Rio Grande prf3 (deletion in Prf) |
Pseudomonas fluorescens 6 h |
36.47 |
| S0648 |
Rio Grande prf3 (deletion in Prf) |
Pseudomonas putida 6 h |
41.69 |
| S0649 |
Rio Grande prf3 (deletion in Prf) |
Agrobacterium tumefaciens 6 h |
34.15 |
Experiment: Transcriptome or gene expression of various fruit tissue in FW3.2 NILs
| sample ID | genotype | description | RPKM |
|---|
| S0671 |
Yellow Stuffer (cultivated allele of fw3.2) |
fw3.2(ys) 5 Days Post Anthesis Pericarp |
20.63 |
| S0672 |
Yellow Stuffer (wild allele of fw3.2) |
fw3.2(wt) 5 Days Post Anthesis Pericarp |
22.85 |
| S0673 |
Yellow Stuffer (cultivated allele of fw3.2) |
fw3.2(ys) 7 Days Post Anthesis Pericarp |
29.08 |
| S0674 |
Yellow Stuffer (wild allele of fw3.2) |
fw3.2(wt) 7 Days Post Anthesis Pericarp |
29.37 |
| S0675 |
Yellow Stuffer (cultivated allele of fw3.2) |
fw3.2(ys) 10 Days Post Anthesis Pericarp |
32.53 |
| S0676 |
Yellow Stuffer (wild allele of fw3.2) |
fw3.2(wt) 10 Days Post Anthesis Pericarp |
32.26 |
| S0677 |
Yellow Stuffer (cultivated allele of fw3.2) |
fw3.2(ys) 5 Days Post Anthesis Seed |
20.94 |
| S0678 |
Yellow Stuffer (wild allele of fw3.2) |
fw3.2(wt) 5 Days Post Anthesis Seed |
20.92 |
| S0679 |
Yellow Stuffer (cultivated allele of fw3.2) |
fw3.2(ys) 7 Days Post Anthesis Seed |
21.95 |
| S0680 |
Yellow Stuffer (wild allele of fw3.2) |
fw3.2(wt) 7 Days Post Anthesis Seed |
23.08 |
| S0681 |
Yellow Stuffer (cultivated allele of fw3.2) |
fw3.2(ys) 10 Days Post Anthesis Seed |
25.46 |
| S0682 |
Yellow Stuffer (wild allele of fw3.2) |
fw3.2(wt) 10 Days Post Anthesis Seed |
24.33 |
| S0683 |
Yellow Stuffer (cultivated allele of fw3.2) |
fw3.2(ys) young flower bud |
25.36 |
| S0684 |
Yellow Stuffer (wild allele of fw3.2) |
fw3.2(wt) young flower bud |
21.83 |
Experiment: Tissue-specific transcriptome profiling of Solanum pimpinellifolium ovaries and fruit using LCM-coupled to RNA-seq
| sample ID | genotype | description | RPKM |
|---|
| S0685 |
LA1589 |
LA1589, Ovule 0 dpa (SA1_D0_OV) |
4.17 |
| S0686 |
sun |
sun, Ovule 0 dpa (SA2_D0_OV) |
4.71 |
| S0687 |
LA1589 |
LA1589, Placenta 0 dpa (SA1_D0_PL) |
4.95 |
| S0688 |
sun |
sun, Placenta 0 dpa (SA2_D0_PL) |
3.7 |
| S0689 |
LA1589 |
LA1589, Septum 0 dpa (SA1_D0_SE) |
3.65 |
| S0690 |
sun |
sun, Septum 0 dpa (SA2_D0_SE) |
6.93 |
| S0691 |
LA1589 |
LA1589, Pericarp 0 dpa (SA1_D0_PE) |
6.81 |
| S0692 |
sun |
sun, Pericarp 0 dpa (SA2_D0_PE) |
3.16 |
| S0693 |
LA1589 |
LA1589, Embryo 4 dpa Fruit (SA1_D4_EM) |
5.94 |
| S0694 |
sun |
sun, Embryo 4 dpa Fruit (SA2_D4_EM) |
6.37 |
| S0695 |
LA1589 |
LA1589, Endosperm 4 dpa Fruit (SA1_D4_ENDO) |
3.18 |
| S0696 |
sun |
sun, Endosperm 4 dpa Fruit (SA2_D4_ENDO) |
4.89 |
| S0697 |
LA1589 |
LA1589, Seed Coat 4 dpa Fruit (SA1_D4_SC) |
12.7 |
| S0698 |
sun |
sun, Seed Coat 4 dpa Fruit (SA2_D4_SC) |
14.98 |
| S0699 |
LA1589 |
LA1589, Funiculus 4 dpa Fruit (SA1_D4_FU) |
9.89 |
| S0700 |
sun |
sun, Funiculus 4 dpa Fruit (SA2_D4_FU) |
6.76 |
| S0701 |
LA1589 |
LA1589, Placenta 4 dpa Fruit (SA1_D4_PL) |
10.8 |
| S0702 |
sun |
sun, Placenta 4 dpa Fruit (SA2_D4_PL) |
6.45 |
| S0703 |
LA1589 |
LA1589, Septum 4 dpa Fruit (SA1_D4_SE) |
8.12 |
| S0704 |
sun |
sun, Septum 4 dpa Fruit (SA2_D4_SE) |
11.73 |
| S0705 |
LA1589 |
LA1589, Pericarp 4 dpa Fruit (SA1_D4_PE) |
6.98 |
| S0706 |
sun |
sun, Pericarp 4 dpa Fruit (SA2_D4_PE) |
9.12 |
Experiment: Transcriptome sequencing of leaves of resistant (RG-PtoR) and susceptible (RG-prf3 and RG-prf19) tomato plants treated with Pst DC3000
| sample ID | genotype | description | RPKM |
|---|
| S0740 |
Rio Grande-PtoR |
DC3000 4 h |
20.41 |
| S0741 |
Rio Grande-prf3 |
DC3000 4 h |
24.93 |
| S0742 |
Rio Grande-prf19 |
DC3000 4 h |
24.69 |
| S0743 |
Rio Grande-PtoR |
DC3000 6 h |
27.59 |
| S0744 |
Rio Grande-prf3 |
DC3000 6 h |
26.37 |
| S0745 |
Rio Grande-prf19 |
DC3000 6 h |
24.91 |
Experiment: Transcriptome sequencing of tomato leaves trated with diferent Pst DC3000 mutant strains
| sample ID | genotype | description | RPKM |
|---|
| S0746 |
Rio Grande-PtoR |
DC3000ΔhopQ1-1 ΔfliC 6 h |
34.17 |
| S0747 |
Rio Grande-PtoR |
DC3000ΔhopQ1-1 ΔavrPto ΔavrPtoB 6 h |
28.05 |
| S0748 |
Rio Grande-PtoR |
DC3000ΔhopQ1-1 ΔavrPto ΔavrPtoB ΔfliC 6 h |
24.39 |
Experiment: Transcriptome profiling of anthesis-stage ovaries from the fs8.1 backcrossed lines in Rio Grande background
| sample ID | genotype | description | RPKM |
|---|
| S0749 |
fs8.1, backcrossed line 09S204, BC4F2, Rio Grande background |
09S204-ee, ovary(anthesis) |
46.43 |
| S0750 |
WT, backcrossed line 09S204, BC4F2, Rio Grande background |
09S204-pp, ovary(anthesis) |
45.73 |
| S0751 |
fs8.1, backcrossed line 09S236, BC3F2, Rio Grande background |
09S236-ee, ovary(anthesis) |
47.91 |
| S0752 |
WT, backcrossed line 09S236, BC3F2, Rio Grande background |
09S236-pp, ovary(anthesis) |
46.38 |
| S0753 |
fs8.1, backcrossed line 09S237, BC1F4, Rio Grande background |
09S237-ee, ovary(anthesis) |
48.26 |
| S0754 |
WT, backcrossed line 09S237, BC1F4, Rio Grande background |
09S237-pp, ovary(anthesis) |
45.98 |
Experiment: Domain-wise effect of AvrPto on the tomato transcriptome 6 hours post inoculation
| sample ID | genotype | description | RPKM |
|---|
| S0755 |
Rio Grande-prf3 |
D28E (pCPP45::avrPto) 6 h |
26.96 |
| S0756 |
Rio Grande-prf3 |
D28E (pCPP45::avrPto I96A) 6 h |
29.35 |
| S0757 |
Rio Grande-prf3 |
D28E (pCPP45::avrPto 2xA) 6 h |
28.76 |
| S0758 |
Rio Grande-prf3 |
D28E (pCPP45::avrPto I96A + 2xA) 6 h |
29.79 |
| S0759 |
Rio Grande-prf3 |
Mock 6 h |
27.2 |
Experiment: Transcriptome sequencing of Pti1 silenced plants after treatment of Pst DC3000ΔAvrPtoΔAvrPtoB
| sample ID | genotype | description | RPKM |
|---|
| S0658 |
Rio Grande prf3 (deletion in Prf) |
Azygous of hpPti1 DC3000ΔAvrPtoΔAvrPtoB 3 h |
39.06 |
| S0659 |
Rio Grande prf3 (deletion in Prf) |
hpPti1-F10 DC3000ΔAvrPtoΔAvrPtoB 3 h |
42.4 |
| S0660 |
Rio Grande prf3 (deletion in Prf) |
hpPti1-F27 DC3000ΔAvrPtoΔAvrPtoB 3 h |
37.43 |
| S0661 |
Rio Grande prf3 (deletion in Prf) |
Azygous of hpPti1 DC3000ΔAvrPtoΔAvrPtoB 6 h |
31.72 |
| S0662 |
Rio Grande prf3 (deletion in Prf), hairpin Pti1, line F10 |
hpPti1-F10 DC3000ΔAvrPtoΔAvrPtoB 6 h |
30.2 |
| S0663 |
Rio Grande prf3 (deletion in Prf), hairpin Pti1, line F27 |
hpPti1-F27 ΔAvrPtoΔAvrPtoB 6 h |
28.8 |
Experiment: Gene expression in IM/FM, 2 dpi, 4 dpi and 6 dpi floral buds of wild type, lc, fas and lc/fas in the LA1589 background
| sample ID | genotype | description | RPKM |
|---|
| S1087 |
LA1589 |
2dpi floral buds |
8.63 |
| S1088 |
lc |
2dpi floral buds |
5.17 |
| S1089 |
fas |
2dpi floral buds |
6.64 |
| S1090 |
lc/fas |
2dpi floral buds |
6.91 |
| S1091 |
LA1589 |
4dpi floral buds |
5.35 |
| S1092 |
lc |
4dpi floral buds |
6.05 |
| S1093 |
fas |
4dpi floral buds |
6.09 |
| S1094 |
lc/fas |
4dpi floral buds |
7.2 |
| S1095 |
LA1589 |
6dpi floral buds |
6.41 |
| S1096 |
lc |
6dpi floral buds |
7.95 |
| S1097 |
fas |
6dpi floral buds |
10.06 |
| S1098 |
lc/fas |
6dpi floral buds |
6.8 |
| S1099 |
LA1589 |
floral and inflorescence meristem |
5.37 |
| S1100 |
lc |
floral and inflorescence meristem |
6.43 |
| S1101 |
fas |
floral and inflorescence meristem |
5.71 |
| S1102 |
lc/fas |
floral and inflorescence meristem |
6.13 |
| S1103 |
LA1589 |
sympodial shoot apical meristem |
3.58 |
| S1104 |
lc |
sympodial shoot apical meristem |
2.23 |
| S1105 |
fas |
sympodial shoot apical meristem |
6.55 |
| S1106 |
lc/fas |
sympodial shoot apical meristem |
6.01 |
Experiment: RNA-Seq analysis on tomato anthesis flowers of ovate/sov1 NILs in the LA1589 background
| sample ID | genotype | description | RPKM |
|---|
| S0764 |
LA1589 |
LA1589, flowers |
44.37 |
| S0765 |
ovate |
ovate, flowers |
38.5 |
| S0766 |
sov1 |
sov1, flowers |
45.53 |
| S0767 |
ovate/sov1 |
ovate/sov1, flowers |
41.03 |
Experiment: Transcriptome profiling of three fruit tissues from the fw11.3 NILs in cultivated background
| sample ID | genotype | description | RPKM |
|---|
| S0768 |
Rio Grande (fw11.3-D) |
fw11.3-D Pericarp, 10 Days Post Anthesis |
69.19 |
| S0769 |
Rio Grande (fw11.3-D) |
fw11.3-D Septum and Placenta, 10 Days Post Anthesis |
58.7 |
| S0770 |
Rio Grande (fw11.3-D) |
fw11.3-D Columella, 10 Days Post Anthesis |
58.54 |
| S0771 |
Rio Grande (fw11.3-D) |
fw11.3-D Pericarp, 15 Days Post Anthesis |
63.07 |
| S0772 |
Rio Grande (fw11.3-D) |
fw11.3-D Septum and Placenta, 15 Days Post Anthesis |
53.09 |
| S0773 |
Rio Grande (fw11.3-D) |
fw11.3-D Columella, 15 Days Post Anthesis |
54.91 |
| S0774 |
Rio Grande (fw11.3-D) |
fw11.3-D Pericarp, 25 Days Post Anthesis |
65.07 |
| S0775 |
Rio Grande (fw11.3-D) |
fw11.3-D Septum and Placenta, 25 Days Post Anthesis |
52.01 |
| S0776 |
Rio Grande (fw11.3-D) |
fw11.3-D Columella, 25 Days Post Anthesis |
54.27 |
| S0777 |
Rio Grande (fw11.3-D) |
fw11.3-D Pericarp, 33 Days Post Anthesis |
81.57 |
| S0778 |
Rio Grande (fw11.3-D) |
fw11.3-D Septum and Placenta, 33 Days Post Anthesis |
71.64 |
| S0779 |
Rio Grande (fw11.3-D) |
fw11.3-D Columella, 33 Days Post Anthesis |
56.36 |
| S0780 |
Rio Grande (fw11.3-D) |
fw11.3-D Pericarp, 4 Days Post Anthesis |
55.72 |
| S0781 |
Rio Grande (fw11.3-D) |
fw11.3-D Septum, Placenta and Columella, 4 Days Post Anthesis |
51.86 |
| S0782 |
Rio Grande (fw11.3-D) |
fw11.3-D Pericarp, 7 Days Post Anthesis |
66.73 |
| S0783 |
Rio Grande (fw11.3-D) |
fw11.3-D Septum and Placenta, 7 Days Post Anthesis |
51.66 |
| S0784 |
Rio Grande (fw11.3-D) |
fw11.3-D Columella, 7 Days Post Anthesis |
62.76 |
| S0785 |
Rio Grande (fw11.3-D) |
fw11.3-D Pericarp, Turning |
60.84 |
| S0786 |
Rio Grande (fw11.3-D) |
fw11.3-D Septum and Placenta, Turning |
42.19 |
| S0787 |
Rio Grande (fw11.3-D) |
fw11.3-D Columella, Turning |
51.15 |
| S0788 |
Rio Grande (fw11.3-WT) |
fw11.3-WT Pericarp, 10 Days Post Anthesis |
66.91 |
| S0789 |
Rio Grande (fw11.3-WT) |
fw11.3-WT Septum and Placenta, 10 Days Post Anthesis |
50 |
| S0790 |
Rio Grande (fw11.3-WT) |
fw11.3-WT Columella, 10 Days Post Anthesis |
55.72 |
| S0791 |
Rio Grande (fw11.3-WT) |
fw11.3-WT Pericarp, 15 Days Post Anthesis |
63.72 |
| S0792 |
Rio Grande (fw11.3-WT) |
fw11.3-WT Septum and Placenta, 15 Days Post Anthesis |
50.49 |
| S0793 |
Rio Grande (fw11.3-WT) |
fw11.3-WT Columella, 15 Days Post Anthesis |
53.52 |
| S0794 |
Rio Grande (fw11.3-WT) |
fw11.3-WT Pericarp, 25 Days Post Anthesis |
61.37 |
| S0795 |
Rio Grande (fw11.3-WT) |
fw11.3-WT Septum and Placenta, 25 Days Post Anthesis |
50.4 |
| S0796 |
Rio Grande (fw11.3-WT) |
fw11.3-WT Columella, 25 Days Post Anthesis |
51.84 |
| S0797 |
Rio Grande (fw11.3-WT) |
fw11.3-WT Pericarp, 33 Days Post Anthesis |
77.72 |
| S0798 |
Rio Grande (fw11.3-WT) |
fw11.3-WT Septum and Placenta, 33 Days Post Anthesis |
57.04 |
| S0799 |
Rio Grande (fw11.3-WT) |
fw11.3-WT Columella, 33 Days Post Anthesis |
58.05 |
| S0800 |
Rio Grande (fw11.3-WT) |
fw11.3-WT Pericarp, 4 Days Post Anthesis |
55.44 |
| S0801 |
Rio Grande (fw11.3-WT) |
fw11.3-WT Septum, Placenta and Columella, 4 Days Post Anthesis |
53.34 |
| S0802 |
Rio Grande (fw11.3-WT) |
fw11.3-WT Pericarp, 7 Days Post Anthesis |
59.76 |
| S0803 |
Rio Grande (fw11.3-WT) |
fw11.3-WT Septum and Placenta, 7 Days Post Anthesis |
50.53 |
| S0804 |
Rio Grande (fw11.3-WT) |
fw11.3-WT Columella, 7 Days Post Anthesis |
60.17 |
| S0805 |
Rio Grande (fw11.3-WT) |
fw11.3-WT Pericarp, Turning |
61.57 |
| S0806 |
Rio Grande (fw11.3-WT) |
fw11.3-WT Septum and Placenta, Turning |
34.78 |
| S0807 |
Rio Grande (fw11.3-WT) |
fw11.3-WT Columella, Turning |
52.64 |
Experiment: Transcriptome profiling of three fruit tissues from the sun NILs in cultivated background
| sample ID | genotype | description | RPKM |
|---|
| S0808 |
Sun1642 (sun-WT) |
SA3 Pericarp and exocarp, 4 Days Post Anthesis |
30.23 |
| S0809 |
Sun1642 (sun-WT) |
SA3 Septum and seeds, 4 Days Post Anthesis |
25.71 |
| S0810 |
Sun1642 (sun-WT) |
SA3 Pericarp, 7 Days Post Anthesis |
29.88 |
| S0811 |
Sun1642 (sun-WT) |
SA3 Septum, 7 Days Post Anthesis |
30.08 |
| S0812 |
Sun1642 (sun-WT) |
SA3 Seeds, 7 Days Post Anthesis |
29.66 |
| S0813 |
Sun1642 (sun-WT) |
SA3 Pericarp, 10 Days Post Anthesis |
32.32 |
| S0814 |
Sun1642 (sun-WT) |
SA3 Septum, 10 Days Post Anthesis |
31.03 |
| S0815 |
Sun1642 (sun-WT) |
SA3 Seeds, 10 Days Post Anthesis |
33.38 |
| S0816 |
Sun1642 (sun-D) |
SA4 Pericarp and exocarp, 4 Days Post Anthesis |
29.75 |
| S0817 |
Sun1642 (sun-D) |
SA4 Septum and seeds, 4 Days Post Anthesis |
25.04 |
| S0818 |
Sun1642 (sun-D) |
SA4 Pericarp, 7 Days Post Anthesis |
28.68 |
| S0819 |
Sun1642 (sun-D) |
SA4 Septum, 7 Days Post Anthesis |
27.84 |
| S0820 |
Sun1642 (sun-D) |
SA4 Seeds, 7 Days Post Anthesis |
28.92 |
| S0821 |
Sun1642 (sun-D) |
SA4 Pericarp, 10 Days Post Anthesis |
31.48 |
| S0822 |
Sun1642 (sun-D) |
SA4 Septum, 10 Days Post Anthesis |
29.78 |
| S0823 |
Sun1642 (sun-D) |
SA4 Seeds, 10 Days Post Anthesis |
29.66 |
Experiment: Transcriptome profiling of ripe fruits of S. lycopersicoides ILs
| sample ID | genotype | description | RPKM |
|---|
| S0824 |
VF36 |
fruit, red ripe, VF36 |
26.94 |
| S0825 |
LA3882 |
fruit, red ripe, S. lycopersicoides IL LA3882 |
23.46 |
| S0826 |
LA3886 |
fruit, red ripe, S. lycopersicoides IL LA3886 |
24.96 |
| S0827 |
LA3892 |
fruit, red ripe, S. lycopersicoides IL LA3892 |
24.45 |
| S0828 |
LA4230 |
fruit, red ripe, S. lycopersicoides IL LA4230 |
20.7 |
| S0829 |
LA4231 |
fruit, red ripe, S. lycopersicoides IL LA4231 |
21.76 |
| S0830 |
LA4232 |
fruit, red ripe, S. lycopersicoides IL LA4232 |
25.06 |
| S0831 |
LA4233 |
fruit, red ripe, S. lycopersicoides IL LA4233 |
21.02 |
| S0832 |
LA4234A |
fruit, red ripe, S. lycopersicoides IL LA4234A |
25.97 |
| S0833 |
LA4234B |
fruit, red ripe, S. lycopersicoides IL LA4234B |
22.17 |
| S0834 |
LA4235 |
fruit, red ripe, S. lycopersicoides IL LA4235 |
21.88 |
| S0835 |
LA4236A |
fruit, red ripe, S. lycopersicoides IL LA4236A |
18.9 |
| S0836 |
LA4237 |
fruit, red ripe, S. lycopersicoides IL LA4237 |
26.04 |
| S0837 |
LA4238 |
fruit, red ripe, S. lycopersicoides IL LA4238 |
14.39 |
| S0838 |
LA4239 |
fruit, red ripe, S. lycopersicoides IL LA4239 |
15.75 |
| S0839 |
LA4241A |
fruit, red ripe, S. lycopersicoides IL LA4241A |
20.72 |
| S0840 |
LA4241B |
fruit, red ripe, S. lycopersicoides IL LA4241B |
26.31 |
| S0841 |
LA4242A |
fruit, red ripe, S. lycopersicoides IL LA4242A |
21.37 |
| S0842 |
LA4242B |
fruit, red ripe, S. lycopersicoides IL LA4242B |
24.7 |
| S0843 |
LA4242C |
fruit, red ripe, S. lycopersicoides IL LA4242C |
23.1 |
| S0844 |
LA4243 |
fruit, red ripe, S. lycopersicoides IL LA4243 |
24.78 |
| S0845 |
LA4244 |
fruit, red ripe, S. lycopersicoides IL LA4244 |
23.42 |
| S0846 |
LA4245 |
fruit, red ripe, S. lycopersicoides IL LA4245 |
27.65 |
| S0847 |
LA4247 |
fruit, red ripe, S. lycopersicoides IL LA4247 |
17.51 |
| S0848 |
LA4248 |
fruit, red ripe, S. lycopersicoides IL LA4248 |
18.83 |
| S0849 |
LA4249A |
fruit, red ripe, S. lycopersicoides IL LA4249A |
21.23 |
| S0850 |
LA4249B |
fruit, red ripe, S. lycopersicoides IL LA4249B |
18.81 |
| S0851 |
LA4250A |
fruit, red ripe, S. lycopersicoides IL LA4250A |
26.79 |
| S0852 |
LA4250B |
fruit, red ripe, S. lycopersicoides IL LA4250B |
21.6 |
| S0853 |
LA4250C |
fruit, red ripe, S. lycopersicoides IL LA4250C |
23.55 |
| S0854 |
LA4251 |
fruit, red ripe, S. lycopersicoides IL LA4251 |
25.1 |
| S0855 |
LA4252A |
fruit, red ripe, S. lycopersicoides IL LA4252A |
19.6 |
| S0856 |
LA4252B |
fruit, red ripe, S. lycopersicoides IL LA4252B |
24.19 |
| S0857 |
LA4252C |
fruit, red ripe, S. lycopersicoides IL LA4252C |
17.81 |
| S0858 |
LA4252E |
fruit, red ripe, S. lycopersicoides IL LA4252E |
18.32 |
| S0859 |
LA4252F |
fruit, red ripe, S. lycopersicoides IL LA4252F |
19.47 |
| S0860 |
LA4253 |
fruit, red ripe, S. lycopersicoides IL LA4253 |
19.28 |
| S0861 |
LA4254 |
fruit, red ripe, S. lycopersicoides IL LA4254 |
20.15 |
| S0862 |
LA4255 |
fruit, red ripe, S. lycopersicoides IL LA4255 |
22.88 |
| S0863 |
LA4256 |
fruit, red ripe, S. lycopersicoides IL LA4256 |
20.85 |
| S0864 |
LA4257 |
fruit, red ripe, S. lycopersicoides IL LA4257 |
26.02 |
| S0865 |
LA4258 |
fruit, red ripe, S. lycopersicoides IL LA4258 |
27.13 |
| S0866 |
LA4260 |
fruit, red ripe, S. lycopersicoides IL LA4260 |
17.12 |
| S0867 |
LA4262A |
fruit, red ripe, S. lycopersicoides IL LA4262A |
24.73 |
| S0868 |
LA4262B |
fruit, red ripe, S. lycopersicoides IL LA4262B |
19.72 |
| S0869 |
LA4263A |
fruit, red ripe, S. lycopersicoides IL LA4263A |
24.91 |
| S0870 |
LA4263B |
fruit, red ripe, S. lycopersicoides IL LA4263B |
22.62 |
| S0871 |
LA4263C |
fruit, red ripe, S. lycopersicoides IL LA4263C |
24.45 |
| S0872 |
LA4263D |
fruit, red ripe, S. lycopersicoides IL LA4263D |
19.19 |
| S0873 |
LA4264A |
fruit, red ripe, S. lycopersicoides IL LA4264A |
27.87 |
| S0874 |
LA4264B |
fruit, red ripe, S. lycopersicoides IL LA4264B |
28.47 |
| S0875 |
LA4266A |
fruit, red ripe, S. lycopersicoides IL LA4266A |
27.04 |
| S0876 |
LA4266B |
fruit, red ripe, S. lycopersicoides IL LA4266B |
23.67 |
| S0877 |
LA4268 |
fruit, red ripe, S. lycopersicoides IL LA4268 |
26.04 |
| S0878 |
LA4269 |
fruit, red ripe, S. lycopersicoides IL LA4269 |
22.95 |
| S0879 |
LA4270A |
fruit, red ripe, S. lycopersicoides IL LA4270A |
28.05 |
| S0880 |
LA4270B |
fruit, red ripe, S. lycopersicoides IL LA4270B |
23.99 |
| S0881 |
LA4272 |
fruit, red ripe, S. lycopersicoides IL LA4272 |
25.63 |
| S0882 |
LA4273 |
fruit, red ripe, S. lycopersicoides IL LA4273 |
26.11 |
| S0883 |
LA4274 |
fruit, red ripe, S. lycopersicoides IL LA4274 |
27.17 |
| S0884 |
LA4275 |
fruit, red ripe, S. lycopersicoides IL LA4275 |
21.05 |
| S0885 |
LA4276A |
fruit, red ripe, S. lycopersicoides IL LA4276A |
23.92 |
| S0886 |
LA4276B |
fruit, red ripe, S. lycopersicoides IL LA4276B |
23.75 |
| S0887 |
LA4276C |
fruit, red ripe, S. lycopersicoides IL LA4276C |
23.37 |
| S0888 |
LA4276D |
fruit, red ripe, S. lycopersicoides IL LA4276D |
26.04 |
| S0889 |
LA4277 |
fruit, red ripe, S. lycopersicoides IL LA4277 |
22.98 |
| S0890 |
LA4277B |
fruit, red ripe, S. lycopersicoides IL LA4277B |
16.06 |
| S0891 |
LA4277C |
fruit, red ripe, S. lycopersicoides IL LA4277C |
21.38 |
| S0892 |
LA4278A |
fruit, red ripe, S. lycopersicoides IL LA4278A |
26.85 |
| S0893 |
LA4278B |
fruit, red ripe, S. lycopersicoides IL LA4278B |
30.1 |
| S0894 |
LA4279 |
fruit, red ripe, S. lycopersicoides IL LA4279 |
22.33 |
| S0895 |
LA4280 |
fruit, red ripe, S. lycopersicoides IL LA4280 |
22.67 |
| S0896 |
LA4281A |
fruit, red ripe, S. lycopersicoides IL LA4281A |
25.13 |
| S0897 |
LA4281B |
fruit, red ripe, S. lycopersicoides IL LA4281B |
27.47 |
| S0898 |
LA4281C |
fruit, red ripe, S. lycopersicoides IL LA4281C |
24.96 |
| S0899 |
LA4281D |
fruit, red ripe, S. lycopersicoides IL LA4281D |
27.11 |
| S0900 |
LA4281E |
fruit, red ripe, S. lycopersicoides IL LA4281E |
20.86 |
| S0901 |
LA4282A |
fruit, red ripe, S. lycopersicoides IL LA4282A |
22.73 |
| S0902 |
LA4282B |
fruit, red ripe, S. lycopersicoides IL LA4282B |
23.88 |
| S0903 |
LA4282C |
fruit, red ripe, S. lycopersicoides IL LA4282C |
29.03 |
| S0904 |
LA4284 |
fruit, red ripe, S. lycopersicoides IL LA4284 |
27.02 |
| S0905 |
LA4294A |
fruit, red ripe, S. lycopersicoides IL LA4294A |
23.93 |
| S0906 |
LA4294B |
fruit, red ripe, S. lycopersicoides IL LA4294B |
22.97 |
| S0907 |
LA4295 |
fruit, red ripe, S. lycopersicoides IL LA4295 |
21.47 |
| S0908 |
LA4296 |
fruit, red ripe, S. lycopersicoides IL LA4296 |
19.96 |
| S0909 |
LA4297 |
fruit, red ripe, S. lycopersicoides IL LA4297 |
21.84 |
| S0910 |
LA4298 |
fruit, red ripe, S. lycopersicoides IL LA4298 |
24.58 |
| S0911 |
LA4299 |
fruit, red ripe, S. lycopersicoides IL LA4299 |
21.12 |
| S0912 |
LA4300A |
fruit, red ripe, S. lycopersicoides IL LA4300A |
24.98 |
| S0913 |
LA4300B |
fruit, red ripe, S. lycopersicoides IL LA4300B |
27.77 |
| S0914 |
LA4301A |
fruit, red ripe, S. lycopersicoides IL LA4301A |
31.05 |
| S0915 |
LA4303 |
fruit, red ripe, S. lycopersicoides IL LA4303 |
26.53 |
| S0916 |
LA4305 |
fruit, red ripe, S. lycopersicoides IL LA4305 |
27.92 |
| S0917 |
LA4306A |
fruit, red ripe, S. lycopersicoides IL LA4306A |
29.66 |
| S0918 |
LA4306B |
fruit, red ripe, S. lycopersicoides IL LA4306B |
25.8 |
| S0919 |
LA4307 |
fruit, red ripe, S. lycopersicoides IL LA4307 |
25.64 |
| S0920 |
LA4308 |
fruit, red ripe, S. lycopersicoides IL LA4308 |
23.46 |
| S0921 |
LA4308A |
fruit, red ripe, S. lycopersicoides IL LA4308A |
23.57 |
| S0922 |
LA4309 |
fruit, red ripe, S. lycopersicoides IL LA4309 |
26.89 |
| S0923 |
LA4310 |
fruit, red ripe, S. lycopersicoides IL LA4310 |
23.03 |
| S0924 |
LA4311 |
fruit, red ripe, S. lycopersicoides IL LA4311 |
23.26 |
| S0925 |
LA4312A |
fruit, red ripe, S. lycopersicoides IL LA4312A |
25.26 |
| S0926 |
LA4312B |
fruit, red ripe, S. lycopersicoides IL LA4312B |
23.73 |
| S0927 |
LA4313A |
fruit, red ripe, S. lycopersicoides IL LA4313A |
25.89 |
| S0928 |
LA4313B |
fruit, red ripe, S. lycopersicoides IL LA4313B |
25.59 |
Experiment: Transcriptome profiling of ripe fruits of S. pimpinellifolium RILs
| sample ID | genotype | description | RPKM |
|---|
| S0953 |
LA2093 |
fruit, red ripe, S. pimpinellifolium LA2093 |
24.24 |
| S0954 |
NCEBR1 |
fruit, red ripe, S. lycopersicum NCEBR1 |
26.67 |
| S0955 |
RIL-1 |
fruit, red ripe, S. pimpinellifolium RIL-1 |
21.37 |
| S0956 |
RIL-3 |
fruit, red ripe, S. pimpinellifolium RIL-3 |
37.59 |
| S0957 |
RIL-4 |
fruit, red ripe, S. pimpinellifolium RIL-4 |
21.06 |
| S0958 |
RIL-5 |
fruit, red ripe, S. pimpinellifolium RIL-5 |
22.61 |
| S0959 |
RIL-6 |
fruit, red ripe, S. pimpinellifolium RIL-6 |
28.55 |
| S0960 |
RIL-7 |
fruit, red ripe, S. pimpinellifolium RIL-7 |
25.27 |
| S0961 |
RIL-11 |
fruit, red ripe, S. pimpinellifolium RIL-11 |
21.86 |
| S0962 |
RIL-12 |
fruit, red ripe, S. pimpinellifolium RIL-12 |
25.13 |
| S0963 |
RIL-13 |
fruit, red ripe, S. pimpinellifolium RIL-13 |
28.23 |
| S0964 |
RIL-14 |
fruit, red ripe, S. pimpinellifolium RIL-14 |
17.55 |
| S0965 |
RIL-16 |
fruit, red ripe, S. pimpinellifolium RIL-16 |
32.44 |
| S0966 |
RIL-18 |
fruit, red ripe, S. pimpinellifolium RIL-18 |
26.18 |
| S0967 |
RIL-19 |
fruit, red ripe, S. pimpinellifolium RIL-19 |
25.16 |
| S0968 |
RIL-20 |
fruit, red ripe, S. pimpinellifolium RIL-20 |
31.04 |
| S0969 |
RIL-21 |
fruit, red ripe, S. pimpinellifolium RIL-21 |
31.27 |
| S0970 |
RIL-22 |
fruit, red ripe, S. pimpinellifolium RIL-22 |
25.77 |
| S0971 |
RIL-23 |
fruit, red ripe, S. pimpinellifolium RIL-23 |
26.46 |
| S0972 |
RIL-24 |
fruit, red ripe, S. pimpinellifolium RIL-24 |
23.65 |
| S0973 |
RIL-25 |
fruit, red ripe, S. pimpinellifolium RIL-25 |
27.59 |
| S0974 |
RIL-26 |
fruit, red ripe, S. pimpinellifolium RIL-26 |
20.95 |
| S0975 |
RIL-27 |
fruit, red ripe, S. pimpinellifolium RIL-27 |
28.98 |
| S0976 |
RIL-28 |
fruit, red ripe, S. pimpinellifolium RIL-28 |
29.02 |
| S0977 |
RIL-30 |
fruit, red ripe, S. pimpinellifolium RIL-30 |
25.37 |
| S0978 |
RIL-31 |
fruit, red ripe, S. pimpinellifolium RIL-31 |
32.65 |
| S0979 |
RIL-32 |
fruit, red ripe, S. pimpinellifolium RIL-32 |
27.65 |
| S0980 |
RIL-33 |
fruit, red ripe, S. pimpinellifolium RIL-33 |
22.43 |
| S0981 |
RIL-34 |
fruit, red ripe, S. pimpinellifolium RIL-34 |
29.75 |
| S0982 |
RIL-35 |
fruit, red ripe, S. pimpinellifolium RIL-35 |
20.39 |
| S0983 |
RIL-37 |
fruit, red ripe, S. pimpinellifolium RIL-37 |
22.33 |
| S0984 |
RIL-38 |
fruit, red ripe, S. pimpinellifolium RIL-38 |
27.27 |
| S0985 |
RIL-39 |
fruit, red ripe, S. pimpinellifolium RIL-39 |
26.7 |
| S0986 |
RIL-41 |
fruit, red ripe, S. pimpinellifolium RIL-41 |
26 |
| S0987 |
RIL-43 |
fruit, red ripe, S. pimpinellifolium RIL-43 |
22.78 |
| S0988 |
RIL-45 |
fruit, red ripe, S. pimpinellifolium RIL-45 |
20.67 |
| S0989 |
RIL-47 |
fruit, red ripe, S. pimpinellifolium RIL-47 |
25.09 |
| S0990 |
RIL-48 |
fruit, red ripe, S. pimpinellifolium RIL-48 |
25.51 |
| S0991 |
RIL-49 |
fruit, red ripe, S. pimpinellifolium RIL-49 |
28.86 |
| S0992 |
RIL-50 |
fruit, red ripe, S. pimpinellifolium RIL-50 |
27.48 |
| S0993 |
RIL-52 |
fruit, red ripe, S. pimpinellifolium RIL-52 |
24.84 |
| S0994 |
RIL-53 |
fruit, red ripe, S. pimpinellifolium RIL-53 |
19.18 |
| S0995 |
RIL-54 |
fruit, red ripe, S. pimpinellifolium RIL-54 |
23.5 |
| S0996 |
RIL-55 |
fruit, red ripe, S. pimpinellifolium RIL-55 |
29.4 |
| S0997 |
RIL-56 |
fruit, red ripe, S. pimpinellifolium RIL-56 |
30.8 |
| S0998 |
RIL-57 |
fruit, red ripe, S. pimpinellifolium RIL-57 |
28.34 |
| S0999 |
RIL-58 |
fruit, red ripe, S. pimpinellifolium RIL-58 |
29.02 |
| S1000 |
RIL-62 |
fruit, red ripe, S. pimpinellifolium RIL-62 |
27.21 |
| S1001 |
RIL-63 |
fruit, red ripe, S. pimpinellifolium RIL-63 |
32.77 |
| S1002 |
RIL-65 |
fruit, red ripe, S. pimpinellifolium RIL-65 |
23.86 |
| S1003 |
RIL-66 |
fruit, red ripe, S. pimpinellifolium RIL-66 |
23.81 |
| S1004 |
RIL-67 |
fruit, red ripe, S. pimpinellifolium RIL-67 |
20.1 |
| S1005 |
RIL-68 |
fruit, red ripe, S. pimpinellifolium RIL-68 |
19.6 |
| S1006 |
RIL-69 |
fruit, red ripe, S. pimpinellifolium RIL-69 |
29.61 |
| S1007 |
RIL-71 |
fruit, red ripe, S. pimpinellifolium RIL-71 |
33.56 |
| S1008 |
RIL-72 |
fruit, red ripe, S. pimpinellifolium RIL-72 |
33.86 |
| S1009 |
RIL-73 |
fruit, red ripe, S. pimpinellifolium RIL-73 |
30.34 |
| S1010 |
RIL-75 |
fruit, red ripe, S. pimpinellifolium RIL-75 |
25.07 |
| S1011 |
RIL-76 |
fruit, red ripe, S. pimpinellifolium RIL-76 |
24.86 |
| S1012 |
RIL-77 |
fruit, red ripe, S. pimpinellifolium RIL-77 |
32.83 |
| S1013 |
RIL-78 |
fruit, red ripe, S. pimpinellifolium RIL-78 |
25.53 |
| S1014 |
RIL-79 |
fruit, red ripe, S. pimpinellifolium RIL-79 |
25.87 |
| S1015 |
RIL-80 |
fruit, red ripe, S. pimpinellifolium RIL-80 |
27.4 |
| S1016 |
RIL-81 |
fruit, red ripe, S. pimpinellifolium RIL-81 |
24.99 |
| S1017 |
RIL-84 |
fruit, red ripe, S. pimpinellifolium RIL-84 |
28.2 |
| S1018 |
RIL-85 |
fruit, red ripe, S. pimpinellifolium RIL-85 |
26.02 |
| S1019 |
RIL-88 |
fruit, red ripe, S. pimpinellifolium RIL-88 |
26.37 |
| S1020 |
RIL-90 |
fruit, red ripe, S. pimpinellifolium RIL-90 |
22.47 |
| S1021 |
RIL-91 |
fruit, red ripe, S. pimpinellifolium RIL-91 |
21.38 |
| S1022 |
RIL-95 |
fruit, red ripe, S. pimpinellifolium RIL-95 |
20.81 |
| S1023 |
RIL-96 |
fruit, red ripe, S. pimpinellifolium RIL-96 |
26.43 |
| S1024 |
RIL-97 |
fruit, red ripe, S. pimpinellifolium RIL-97 |
27.56 |
| S1025 |
RIL-98 |
fruit, red ripe, S. pimpinellifolium RIL-98 |
34.27 |
| S1026 |
RIL-99 |
fruit, red ripe, S. pimpinellifolium RIL-99 |
29.75 |
| S1027 |
RIL-100 |
fruit, red ripe, S. pimpinellifolium RIL-100 |
30.14 |
| S1028 |
RIL-101 |
fruit, red ripe, S. pimpinellifolium RIL-101 |
32.28 |
| S1029 |
RIL-102 |
fruit, red ripe, S. pimpinellifolium RIL-102 |
22.66 |
| S1030 |
RIL-103 |
fruit, red ripe, S. pimpinellifolium RIL-103 |
26.02 |
| S1031 |
RIL-105 |
fruit, red ripe, S. pimpinellifolium RIL-105 |
36.78 |
| S1032 |
RIL-107 |
fruit, red ripe, S. pimpinellifolium RIL-107 |
28.75 |
| S1033 |
RIL-108 |
fruit, red ripe, S. pimpinellifolium RIL-108 |
27.15 |
| S1034 |
RIL-109 |
fruit, red ripe, S. pimpinellifolium RIL-109 |
31.07 |
| S1035 |
RIL-111 |
fruit, red ripe, S. pimpinellifolium RIL-111 |
26.36 |
| S1036 |
RIL-112 |
fruit, red ripe, S. pimpinellifolium RIL-112 |
28.67 |
| S1037 |
RIL-113 |
fruit, red ripe, S. pimpinellifolium RIL-113 |
38.4 |
| S1038 |
RIL-114 |
fruit, red ripe, S. pimpinellifolium RIL-114 |
21.94 |
| S1039 |
RIL-115 |
fruit, red ripe, S. pimpinellifolium RIL-115 |
25.03 |
| S1040 |
RIL-116 |
fruit, red ripe, S. pimpinellifolium RIL-116 |
25.54 |
| S1041 |
RIL-117 |
fruit, red ripe, S. pimpinellifolium RIL-117 |
21.6 |
| S1042 |
RIL-118 |
fruit, red ripe, S. pimpinellifolium RIL-118 |
24.5 |
| S1043 |
RIL-120 |
fruit, red ripe, S. pimpinellifolium RIL-120 |
25.49 |
| S1044 |
RIL-121 |
fruit, red ripe, S. pimpinellifolium RIL-121 |
25.26 |
| S1045 |
RIL-122 |
fruit, red ripe, S. pimpinellifolium RIL-122 |
18.87 |
| S1046 |
RIL-123 |
fruit, red ripe, S. pimpinellifolium RIL-123 |
26.34 |
| S1047 |
RIL-124 |
fruit, red ripe, S. pimpinellifolium RIL-124 |
27.44 |
| S1048 |
RIL-125 |
fruit, red ripe, S. pimpinellifolium RIL-125 |
22.61 |
| S1049 |
RIL-126 |
fruit, red ripe, S. pimpinellifolium RIL-126 |
27.3 |
| S1050 |
RIL-128 |
fruit, red ripe, S. pimpinellifolium RIL-128 |
26.14 |
| S1051 |
RIL-129 |
fruit, red ripe, S. pimpinellifolium RIL-129 |
19.89 |
| S1052 |
RIL-130 |
fruit, red ripe, S. pimpinellifolium RIL-130 |
24.53 |
| S1053 |
RIL-131 |
fruit, red ripe, S. pimpinellifolium RIL-131 |
22.96 |
| S1054 |
RIL-132 |
fruit, red ripe, S. pimpinellifolium RIL-132 |
19.48 |
| S1055 |
RIL-133 |
fruit, red ripe, S. pimpinellifolium RIL-133 |
26.45 |
| S1056 |
RIL-134 |
fruit, red ripe, S. pimpinellifolium RIL-134 |
26.33 |
| S1057 |
RIL-135 |
fruit, red ripe, S. pimpinellifolium RIL-135 |
29.5 |
| S1058 |
RIL-137 |
fruit, red ripe, S. pimpinellifolium RIL-137 |
17.99 |
| S1059 |
RIL-139 |
fruit, red ripe, S. pimpinellifolium RIL-139 |
18.13 |
| S1060 |
RIL-140 |
fruit, red ripe, S. pimpinellifolium RIL-140 |
26.62 |
| S1061 |
RIL-142 |
fruit, red ripe, S. pimpinellifolium RIL-142 |
26.24 |
| S1062 |
RIL-143 |
fruit, red ripe, S. pimpinellifolium RIL-143 |
22.87 |
| S1063 |
RIL-144 |
fruit, red ripe, S. pimpinellifolium RIL-144 |
29.63 |
| S1064 |
RIL-145 |
fruit, red ripe, S. pimpinellifolium RIL-145 |
20.47 |
| S1065 |
RIL-146 |
fruit, red ripe, S. pimpinellifolium RIL-146 |
34.81 |
| S1066 |
RIL-147 |
fruit, red ripe, S. pimpinellifolium RIL-147 |
35.36 |
| S1067 |
RIL-148 |
fruit, red ripe, S. pimpinellifolium RIL-148 |
28.18 |
| S1068 |
RIL-149 |
fruit, red ripe, S. pimpinellifolium RIL-149 |
32.18 |
| S1069 |
RIL-150 |
fruit, red ripe, S. pimpinellifolium RIL-150 |
25.63 |
| S1070 |
RIL-151 |
fruit, red ripe, S. pimpinellifolium RIL-151 |
24.28 |
| S1071 |
RIL-152 |
fruit, red ripe, S. pimpinellifolium RIL-152 |
26.74 |
| S1072 |
RIL-153 |
fruit, red ripe, S. pimpinellifolium RIL-153 |
29.63 |
| S1073 |
RIL-154 |
fruit, red ripe, S. pimpinellifolium RIL-154 |
23.97 |
| S1074 |
RIL-155 |
fruit, red ripe, S. pimpinellifolium RIL-155 |
31.33 |
| S1075 |
RIL-156 |
fruit, red ripe, S. pimpinellifolium RIL-156 |
34.74 |
| S1076 |
RIL-159 |
fruit, red ripe, S. pimpinellifolium RIL-159 |
23.46 |
| S1077 |
RIL-160 |
fruit, red ripe, S. pimpinellifolium RIL-160 |
30.45 |
| S1078 |
RIL-161 |
fruit, red ripe, S. pimpinellifolium RIL-161 |
24.46 |
| S1079 |
RIL-162 |
fruit, red ripe, S. pimpinellifolium RIL-162 |
26.75 |
| S1080 |
RIL-164 |
fruit, red ripe, S. pimpinellifolium RIL-164 |
29.83 |
| S1081 |
RIL-165 |
fruit, red ripe, S. pimpinellifolium RIL-165 |
26.49 |
| S1082 |
RIL-167 |
fruit, red ripe, S. pimpinellifolium RIL-167 |
23.28 |
| S1083 |
RIL-168 |
fruit, red ripe, S. pimpinellifolium RIL-168 |
28.33 |
| S1084 |
RIL-169 |
fruit, red ripe, S. pimpinellifolium RIL-169 |
26.58 |
| S1085 |
RIL-171 |
fruit, red ripe, S. pimpinellifolium RIL-171 |
28.49 |
| S1086 |
RIL-172 |
fruit, red ripe, S. pimpinellifolium RIL-172 |
29.65 |
Experiment: Transcriptome profiling of fruit of cultivated and wild tomatoes
| sample ID | genotype | description | RPKM |
|---|
| S1107 |
LA0816 (VF-145) |
LA0816 immature green fruit |
30.97 |
| S1108 |
LA0816 (VF-145) |
LA0816 mature green fruit |
38.46 |
| S1109 |
LA0816 (VF-145) |
LA0816 breaker fruit |
35.38 |
| S1110 |
LA0816 (VF-145) |
LA0816 ripe fruit |
30.56 |
| S1111 |
LA1563 |
LA1563 immature green fruit |
33.82 |
| S1112 |
LA1563 |
LA1563 mature green fruit |
33.63 |
| S1113 |
LA1563 |
LA1563 breaker fruit |
30.43 |
| S1114 |
LA1563 |
LA1563 ripe fruit |
35.23 |
| S1115 |
BD-MP |
BD-MP immature green fruit |
36.95 |
| S1116 |
BD-MP |
BD-MP mature green fruit |
43.47 |
| S1117 |
BD-MP |
BD-MP breaker fruit |
35.66 |
| S1118 |
BD-MP |
BD-MP ripe fruit |
30.45 |
| S1119 |
BD-MT |
BD-MT immature green fruit |
19.48 |
| S1120 |
BD-MT |
BD-MT mature green fruit |
27.39 |
| S1121 |
BD-MT |
BD-MT breaker fruit |
26.26 |
| S1122 |
BD-MT |
BD-MT ripe fruit |
25.93 |
| S1123 |
LA1306 |
LA1306 immature green fruit |
43.28 |
| S1124 |
LA1306 |
LA1306 mature green fruit |
34.37 |
| S1125 |
LA1306 |
LA1306 breaker fruit |
37.47 |
| S1126 |
LA1306 |
LA1306 ripe fruit |
31.32 |
| S1127 |
LA1412 |
LA1412 immature green fruit |
47.26 |
| S1128 |
LA1412 |
LA1412 mature green fruit |
38.05 |
| S1129 |
LA1412 |
LA1412 breaker fruit |
39.45 |
| S1130 |
LA1412 |
LA1412 ripe fruit |
28.98 |
| S1131 |
LA1586 |
LA1586 immature green fruit |
43.15 |
| S1132 |
LA1586 |
LA1586 mature green fruit |
34.51 |
| S1133 |
LA1586 |
LA1586 breaker fruit |
28.52 |
| S1134 |
LA1586 |
LA1586 ripe fruit |
18.84 |
| S1135 |
LA1589 |
LA1589 immature green fruit |
44.33 |
| S1136 |
LA1589 |
LA1589 mature green fruit |
42.35 |
| S1137 |
LA1589 |
LA1589 breaker fruit |
22.07 |
| S1138 |
LA1589 |
LA1589 ripe fruit |
26.86 |
| S1139 |
LA1028 |
LA1028 immature green fruit |
35.25 |
| S1141 |
LA1028 |
LA1028 breaker fruit |
20.83 |
| S1142 |
LA1028 |
LA1028 ripe fruit |
24.22 |
| S1143 |
LA1318 |
LA1318 immature green fruit |
37.98 |
| S1144 |
LA1318 |
LA1318 mature green fruit |
46.87 |
| S1145 |
LA1318 |
LA1318 breaker fruit |
21.68 |
| S1146 |
LA1318 |
LA1318 ripe fruit |
28.85 |
| S1147 |
BD-732 |
BD-732 immature green fruit |
33.46 |
| S1148 |
BD-732 |
BD-732 mature green fruit |
35.3 |
| S1149 |
BD-732 |
BD-732 breaker fruit |
33.28 |
| S1150 |
BD-732 |
BD-732 ripe fruit |
29.01 |
| S1151 |
LA0407 |
LA0407 immature green fruit |
37.43 |
| S1152 |
LA0407 |
LA0407 mature green fruit |
34.25 |
| S1153 |
LA0407 |
LA0407 breaker fruit |
30.99 |
| S1154 |
LA0407 |
LA0407 ripe fruit |
33.31 |
| S1155 |
LA1777 |
LA1777 immature green fruit |
39.53 |
| S1156 |
LA1777 |
LA1777 mature green fruit |
23.02 |
| S1157 |
LA1777 |
LA1777 breaker fruit |
30.04 |
| S1158 |
LA1777 |
LA1777 ripe fruit |
23.1 |
| S1159 |
LA0716 |
LA0716 immature green fruit |
41.02 |
| S1160 |
LA0716 |
LA0716 mature green fruit |
26.56 |
| S1161 |
LA0716 |
LA0716 breaker fruit |
30.12 |
| S1162 |
LA0716 |
LA0716 ripe fruit |
26.3 |
| S1163 |
PI126431 |
PI126431 immature green fruit |
30.13 |
| S1164 |
PI126431 |
PI126431 mature green fruit |
32.52 |
| S1165 |
PI126431 |
PI126431 breaker fruit |
27.91 |
| S1166 |
PI126431 |
PI126431 ripe fruit |
28.53 |
| S1167 |
PI126926 |
PI126926 immature green fruit |
31.37 |
| S1168 |
PI126926 |
PI126926 mature green fruit |
25.77 |
| S1169 |
PI126926 |
PI126926 breaker fruit |
25.19 |
| S1170 |
PI126926 |
PI126926 ripe fruit |
25.21 |
| S1171 |
LA1584 |
LA1584 ripe fruit |
26.02 |
| S1172 |
LA2173 |
LA2173 ripe fruit |
16.67 |
| S1173 |
LA1301 |
LA1301 ripe fruit |
20.56 |
| S1174 |
LA1335 |
LA1335 ripe fruit |
20.23 |
| S1175 |
LA1371 |
LA1371 ripe fruit |
20.92 |
| S1176 |
LA1521 |
LA1521 ripe fruit |
17.53 |
| S1177 |
LA1659 |
LA1659 ripe fruit |
20.14 |
| S1178 |
LA0722 |
LA0722 ripe fruit |
23.66 |
| S1179 |
LA1547 |
LA1547 ripe fruit |
19.66 |
| S1180 |
LA3123 |
LA3123 ripe fruit |
31.97 |
| S1181 |
LA2096 |
LA2096 ripe fruit |
28.32 |
| S1182 |
LA1246 |
LA1246 ripe fruit |
18.35 |
| S1183 |
LA1259 |
LA1259 ripe fruit |
28.31 |
| S1184 |
LA2093 |
LA2093 ripe fruit |
44.91 |
| S1185 |
LA0418 |
LA0418 ripe fruit |
31.44 |
| S1186 |
LA2850 |
LA2850 ripe fruit |
20.08 |
| S1187 |
LA1043 |
LA1043 ripe fruit |
18.69 |
| S1188 |
LA0438 |
LA0438 ripe fruit |
18.75 |
| S1189 |
LA0532 |
LA0532 ripe fruit |
25.1 |
| S1190 |
LA1044 |
LA1044 ripe fruit |
22.08 |
| S1191 |
LA1452 |
LA1452 ripe fruit |
20.95 |
| S1192 |
LA0528 |
LA0528 ripe fruit |
24.51 |
| S1193 |
LA0530 |
LA0530 ripe fruit |
22.67 |
| S1194 |
LA0480A |
LA0480A ripe fruit |
29.68 |
| S1195 |
LA0521 |
LA0521 ripe fruit |
36.56 |
| S1196 |
LA0422 |
LA0422 ripe fruit |
24.5 |
| S1197 |
LA0529 |
LA0529 ripe fruit |
32.45 |
| S1198 |
LA1039 |
LA1039 ripe fruit |
20.37 |
| S1199 |
LA1042 |
LA1042 ripe fruit |
19.86 |
| S1200 |
LA1407 |
LA1407 ripe fruit |
31.31 |
| S1201 |
LA1035 |
LA1035 ripe fruit |
32.69 |
|
|
