| Sample | No. raw reads | RPM |
| ID | Organism | Cultivar | Tissue |
| S0736 |
Solanum lycopersicum |
Ailsa Craig |
fruit, immature (17 days after anthesis) |
1 |
0.22 |
| S0735 |
Solanum lycopersicum |
Sunny |
leaf , TSWV-infected |
50 |
3.69 |
| S0734 |
Solanum lycopersicum |
IL8-3-1 |
seedlings, two-week-old |
46 |
35.45 |
| S0733 |
Solanum lycopersicum |
IL8-3 |
seedlings, two-week-old |
28 |
21.24 |
| S0732 |
Solanum lycopersicum |
IL8-2-1 |
seedlings, two-week-old |
36 |
25.65 |
| S0731 |
Solanum lycopersicum |
IL8-2 |
seedlings, two-week-old |
57 |
41.98 |
| S0730 |
Solanum lycopersicum |
IL8-1-3 |
seedlings, two-week-old |
46 |
28.72 |
| S0729 |
Solanum lycopersicum |
IL8-1D |
seedlings, two-week-old |
22 |
14.01 |
| S0728 |
Solanum lycopersicum |
IL8-1-1 |
seedlings, two-week-old |
66 |
43.5 |
| S0727 |
Solanum lycopersicum |
IL2-5 |
seedlings, two-week-old |
95 |
58.08 |
| S0726 |
Solanum lycopersicum |
IL1-1 |
seedlings, two-week-old |
32 |
19.16 |
| S0725 |
Solanum lycopersicum x S. pennellii |
M82 x LA716 (F2) |
seedlings, two-week-old , replicate3 |
186 |
181.48 |
| S0724 |
Solanum lycopersicum x S. pennellii |
M82 x LA716 (F2) |
seedlings, two-week-old , replicate2 |
32 |
18.68 |
| S0723 |
Solanum lycopersicum x S. pennellii |
M82 x LA716 (F2) |
seedlings, two-week-old , replicate1 |
45 |
44.14 |
| S0722 |
Solanum lycopersicum x S. pennellii |
M82 x LA716 (F1) |
seedlings, two-week-old , replicate2 |
20 |
14.14 |
| S0721 |
Solanum lycopersicum x S. pennellii |
M82 x LA716 (F1) |
seedlings, two-week-old , replicate1 |
251 |
273.24 |
| S0720 |
Solanum pennellii |
LA716 |
seedlings, two-week-old , replicate2 |
156 |
149.05 |
| S0719 |
Solanum pennellii |
LA716 |
seedlings, two-week-old , replicate1 |
592 |
1710.13 |
| S0718 |
Solanum lycopersicum |
M82 |
seedlings, two-week-old , replicate2 |
75 |
52.25 |
| S0717 |
Solanum lycopersicum |
M82 |
seedlings, two-week-old , replicate1 |
65 |
86.74 |
| S0716 |
Solanum lycopersicum |
MicroTom |
fruit , 7 days post breaker |
18 |
7.53 |
| S0715 |
Solanum lycopersicum |
MicroTom |
fruit , 5 days post breaker |
5 |
5.11 |
| S0714 |
Solanum lycopersicum |
MicroTom |
fruit , 3 days post breaker |
249 |
62.67 |
| S0713 |
Solanum lycopersicum |
MicroTom |
fruit , breaker stage |
1 |
0.28 |
| S0712 |
Solanum lycopersicum |
MicroTom |
fruit , mature green |
52 |
13.3 |
| S0711 |
Solanum lycopersicum |
MicroTom |
fruit , 11mm to 14mm in diameter |
34 |
16.38 |
| S0710 |
Solanum lycopersicum |
MicroTom |
fruit , 5mm to 7mm in diameter |
6 |
4.98 |
| S0709 |
Solanum lycopersicum |
MicroTom |
fruit , 1mm to 3mm in diameter |
6 |
3.4 |
| S0708 |
Solanum lycopersicum |
MicroTom |
flower, open |
3 |
0.93 |
| S0707 |
Solanum lycopersicum |
MicroTom |
flower bud, closed bud before flower blooming |
20 |
5.25 |
| S0373 |
Solanum lycopersicum |
Heinz 1706 |
fruit |
1 |
0.3 |
| S0372 |
Solanum lycopersicum |
Heinz 1706 |
flower |
6 |
1.82 |
| S0371 |
Solanum lycopersicum |
Heinz 1706 |
leaf |
21 |
6.33 |
| hit miRNA | alignment |
|---|
| aly-miR156a-5p | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| aly-miR156b-5p | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| aly-miR156c-5p | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| aly-miR156d-5p | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| aly-miR156e-5p | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| aly-miR156f-5p | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| ath-miR156a | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| ath-miR156b | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| ath-miR156c | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| ath-miR156d | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| ath-miR156e | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| ath-miR156f | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| bdi-miR156b | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| bdi-miR156c | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| bdi-miR156d | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| bna-miR156a | TGACAGAAGAGAGTGAGCA-- |||||||||||||||||||xx TGACAGAAGAGAGTGAGCACA |
| bna-miR156d | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| bna-miR156e | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| bna-miR156f | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| cca-miR156a | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| cca-miR156b | TGACAGAAGAGAGTGAGCA-- |||||||||||||||||||xx TGACAGAAGAGAGTGAGCATA |
| cme-miR156a | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| cme-miR156c | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| cme-miR156d | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| cme-miR156i | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| cme-miR156j | --TGACAGAAGAGAGTGAGCA- xx|||||||||||||||||||x GTTGACAGAAGAGAGTGAGCAC |
| csi-miR156 | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| ctr-miR156 | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| dpr-miR156b | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| ghr-miR156a | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| ghr-miR156b | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| ghr-miR156d | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| gma-miR156a | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| gma-miR156h | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| gma-miR156k | -TGACAGAAGAGAGTGAGCA- x|||||||||||||||||||x TTGACAGAAGAGAGTGAGCAC |
| gma-miR156n | -TGACAGAAGAGAGTGAGCA- x|||||||||||||||||||x TTGACAGAAGAGAGTGAGCAC |
| gma-miR156o | -TGACAGAAGAGAGTGAGCA- x|||||||||||||||||||x TTGACAGAAGAGAGTGAGCAC |
| gma-miR156q | TGACAGAAGAGAGTGAGCA-- |||||||||||||||||||xx TGACAGAAGAGAGTGAGCACT |
| gma-miR156s | TGACAGAAGAGAGTGAGCA-- |||||||||||||||||||xx TGACAGAAGAGAGTGAGCACT |
| gma-miR156u | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| gma-miR156v | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| gma-miR156w | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| gma-miR156x | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| gma-miR156y | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| han-miR156a | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| han-miR156b | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| har-miR156a | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| htu-miR156a | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| hvu-miR156 | TGACAGAAGAGAGTGAGCA-- |||||||||||||||||||xx TGACAGAAGAGAGTGAGCACA |
| mdm-miR156a | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| mdm-miR156b | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| mdm-miR156c | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| mdm-miR156d | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| mdm-miR156e | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| mdm-miR156f | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| mdm-miR156g | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| mdm-miR156h | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| mdm-miR156i | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| mdm-miR156j | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| mdm-miR156k | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| mdm-miR156l | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| mdm-miR156m | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| mdm-miR156n | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| mdm-miR156o | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| mtr-miR156b | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| mtr-miR156c | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| mtr-miR156d | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| mtr-miR156i | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| nta-miR156a | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| nta-miR156b | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| nta-miR156c | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| nta-miR156d | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| nta-miR156e | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| osa-miR156a | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| osa-miR156b-5p | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| osa-miR156c-5p | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| osa-miR156d | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| osa-miR156e | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| osa-miR156f-5p | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| osa-miR156g-5p | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| osa-miR156h-5p | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| osa-miR156i | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| osa-miR156j-5p | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| ppt-miR156a | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| ppt-miR156b | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| ppt-miR156c | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| ptc-miR156a | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| ptc-miR156b | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| ptc-miR156c | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| ptc-miR156d | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| ptc-miR156e | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| ptc-miR156f | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| rco-miR156a | TGACAGAAGAGAGTGAGCA-- |||||||||||||||||||xx TGACAGAAGAGAGTGAGCACA |
| rco-miR156b | TGACAGAAGAGAGTGAGCA-- |||||||||||||||||||xx TGACAGAAGAGAGTGAGCACA |
| rco-miR156c | TGACAGAAGAGAGTGAGCA-- |||||||||||||||||||xx TGACAGAAGAGAGTGAGCACA |
| rco-miR156d | TGACAGAAGAGAGTGAGCA-- |||||||||||||||||||xx TGACAGAAGAGAGTGAGCACA |
| sbi-miR156a | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| sbi-miR156b | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| sbi-miR156c | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| sbi-miR156f | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| sbi-miR156g | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| sbi-miR156h | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| sbi-miR156i | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| sof-miR156 | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| ssl-miR156 | TGACAGAAGAGAGTGAGCA-- |||||||||||||||||||xx TGACAGAAGAGAGTGAGCACA |
| ssp-miR156 | TGACAGAAGAGAGTGAGCA-- |||||||||||||||||||xx TGACAGAAGAGAGTGAGCACA |
| tae-miR156 | TGACAGAAGAGAGTGAGCA-- |||||||||||||||||||xx TGACAGAAGAGAGTGAGCACA |
| tcc-miR156b | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| tcc-miR156c | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| tcc-miR156d | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| tcc-miR156g | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| vun-miR156a | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| vvi-miR156b | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| vvi-miR156c | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| vvi-miR156d | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| zma-miR156a-5p | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| zma-miR156b-5p | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| zma-miR156c | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| zma-miR156d-5p | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| zma-miR156e-5p | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| zma-miR156f-5p | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| zma-miR156g-5p | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| zma-miR156h-5p | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| zma-miR156i-5p | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |
| zma-miR156l-5p | TGACAGAAGAGAGTGAGCA- |||||||||||||||||||x TGACAGAAGAGAGTGAGCAC |