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Tomato miRNA M00002

sequenceLengthmiRNA familysRNA IDtarget
UGACAGAAGAGAGUGAGCA19miR156 S23094734click here

Digital expression

SampleNo. raw readsRPM
IDOrganismCultivarTissue
S0736 Solanum lycopersicum Ailsa Craig fruit, immature (17 days after anthesis) 1 0.22
S0735 Solanum lycopersicum Sunny leaf , TSWV-infected 50 3.69
S0734 Solanum lycopersicum IL8-3-1 seedlings, two-week-old 46 35.45
S0733 Solanum lycopersicum IL8-3 seedlings, two-week-old 28 21.24
S0732 Solanum lycopersicum IL8-2-1 seedlings, two-week-old 36 25.65
S0731 Solanum lycopersicum IL8-2 seedlings, two-week-old 57 41.98
S0730 Solanum lycopersicum IL8-1-3 seedlings, two-week-old 46 28.72
S0729 Solanum lycopersicum IL8-1D seedlings, two-week-old 22 14.01
S0728 Solanum lycopersicum IL8-1-1 seedlings, two-week-old 66 43.5
S0727 Solanum lycopersicum IL2-5 seedlings, two-week-old 95 58.08
S0726 Solanum lycopersicum IL1-1 seedlings, two-week-old 32 19.16
S0725 Solanum lycopersicum x S. pennellii M82 x LA716 (F2) seedlings, two-week-old , replicate3 186 181.48
S0724 Solanum lycopersicum x S. pennellii M82 x LA716 (F2) seedlings, two-week-old , replicate2 32 18.68
S0723 Solanum lycopersicum x S. pennellii M82 x LA716 (F2) seedlings, two-week-old , replicate1 45 44.14
S0722 Solanum lycopersicum x S. pennellii M82 x LA716 (F1) seedlings, two-week-old , replicate2 20 14.14
S0721 Solanum lycopersicum x S. pennellii M82 x LA716 (F1) seedlings, two-week-old , replicate1 251 273.24
S0720 Solanum pennellii LA716 seedlings, two-week-old , replicate2 156 149.05
S0719 Solanum pennellii LA716 seedlings, two-week-old , replicate1 592 1710.13
S0718 Solanum lycopersicum M82 seedlings, two-week-old , replicate2 75 52.25
S0717 Solanum lycopersicum M82 seedlings, two-week-old , replicate1 65 86.74
S0716 Solanum lycopersicum MicroTom fruit , 7 days post breaker 18 7.53
S0715 Solanum lycopersicum MicroTom fruit , 5 days post breaker 5 5.11
S0714 Solanum lycopersicum MicroTom fruit , 3 days post breaker 249 62.67
S0713 Solanum lycopersicum MicroTom fruit , breaker stage 1 0.28
S0712 Solanum lycopersicum MicroTom fruit , mature green 52 13.3
S0711 Solanum lycopersicum MicroTom fruit , 11mm to 14mm in diameter 34 16.38
S0710 Solanum lycopersicum MicroTom fruit , 5mm to 7mm in diameter 6 4.98
S0709 Solanum lycopersicum MicroTom fruit , 1mm to 3mm in diameter 6 3.4
S0708 Solanum lycopersicum MicroTom flower, open 3 0.93
S0707 Solanum lycopersicum MicroTom flower bud, closed bud before flower blooming 20 5.25
S0373 Solanum lycopersicum Heinz 1706 fruit 1 0.3
S0372 Solanum lycopersicum Heinz 1706 flower 6 1.82
S0371 Solanum lycopersicum Heinz 1706 leaf 21 6.33

Hits on known miRNAs

hit miRNAalignment
aly-miR156a-5pTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
aly-miR156b-5pTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
aly-miR156c-5pTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
aly-miR156d-5pTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
aly-miR156e-5pTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
aly-miR156f-5pTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
ath-miR156aTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
ath-miR156bTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
ath-miR156cTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
ath-miR156dTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
ath-miR156eTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
ath-miR156fTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
bdi-miR156bTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
bdi-miR156cTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
bdi-miR156dTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
bna-miR156aTGACAGAAGAGAGTGAGCA--
|||||||||||||||||||xx
TGACAGAAGAGAGTGAGCACA
bna-miR156dTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
bna-miR156eTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
bna-miR156fTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
cca-miR156aTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
cca-miR156bTGACAGAAGAGAGTGAGCA--
|||||||||||||||||||xx
TGACAGAAGAGAGTGAGCATA
cme-miR156aTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
cme-miR156cTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
cme-miR156dTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
cme-miR156iTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
cme-miR156j--TGACAGAAGAGAGTGAGCA-
xx|||||||||||||||||||x
GTTGACAGAAGAGAGTGAGCAC
csi-miR156TGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
ctr-miR156TGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
dpr-miR156bTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
ghr-miR156aTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
ghr-miR156bTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
ghr-miR156dTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
gma-miR156aTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
gma-miR156hTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
gma-miR156k-TGACAGAAGAGAGTGAGCA-
x|||||||||||||||||||x
TTGACAGAAGAGAGTGAGCAC
gma-miR156n-TGACAGAAGAGAGTGAGCA-
x|||||||||||||||||||x
TTGACAGAAGAGAGTGAGCAC
gma-miR156o-TGACAGAAGAGAGTGAGCA-
x|||||||||||||||||||x
TTGACAGAAGAGAGTGAGCAC
gma-miR156qTGACAGAAGAGAGTGAGCA--
|||||||||||||||||||xx
TGACAGAAGAGAGTGAGCACT
gma-miR156sTGACAGAAGAGAGTGAGCA--
|||||||||||||||||||xx
TGACAGAAGAGAGTGAGCACT
gma-miR156uTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
gma-miR156vTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
gma-miR156wTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
gma-miR156xTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
gma-miR156yTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
han-miR156aTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
han-miR156bTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
har-miR156aTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
htu-miR156aTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
hvu-miR156TGACAGAAGAGAGTGAGCA--
|||||||||||||||||||xx
TGACAGAAGAGAGTGAGCACA
mdm-miR156aTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
mdm-miR156bTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
mdm-miR156cTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
mdm-miR156dTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
mdm-miR156eTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
mdm-miR156fTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
mdm-miR156gTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
mdm-miR156hTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
mdm-miR156iTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
mdm-miR156jTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
mdm-miR156kTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
mdm-miR156lTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
mdm-miR156mTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
mdm-miR156nTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
mdm-miR156oTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
mtr-miR156bTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
mtr-miR156cTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
mtr-miR156dTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
mtr-miR156iTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
nta-miR156aTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
nta-miR156bTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
nta-miR156cTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
nta-miR156dTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
nta-miR156eTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
osa-miR156aTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
osa-miR156b-5pTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
osa-miR156c-5pTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
osa-miR156dTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
osa-miR156eTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
osa-miR156f-5pTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
osa-miR156g-5pTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
osa-miR156h-5pTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
osa-miR156iTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
osa-miR156j-5pTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
ppt-miR156aTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
ppt-miR156bTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
ppt-miR156cTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
ptc-miR156aTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
ptc-miR156bTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
ptc-miR156cTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
ptc-miR156dTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
ptc-miR156eTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
ptc-miR156fTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
rco-miR156aTGACAGAAGAGAGTGAGCA--
|||||||||||||||||||xx
TGACAGAAGAGAGTGAGCACA
rco-miR156bTGACAGAAGAGAGTGAGCA--
|||||||||||||||||||xx
TGACAGAAGAGAGTGAGCACA
rco-miR156cTGACAGAAGAGAGTGAGCA--
|||||||||||||||||||xx
TGACAGAAGAGAGTGAGCACA
rco-miR156dTGACAGAAGAGAGTGAGCA--
|||||||||||||||||||xx
TGACAGAAGAGAGTGAGCACA
sbi-miR156aTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
sbi-miR156bTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
sbi-miR156cTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
sbi-miR156fTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
sbi-miR156gTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
sbi-miR156hTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
sbi-miR156iTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
sof-miR156TGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
ssl-miR156TGACAGAAGAGAGTGAGCA--
|||||||||||||||||||xx
TGACAGAAGAGAGTGAGCACA
ssp-miR156TGACAGAAGAGAGTGAGCA--
|||||||||||||||||||xx
TGACAGAAGAGAGTGAGCACA
tae-miR156TGACAGAAGAGAGTGAGCA--
|||||||||||||||||||xx
TGACAGAAGAGAGTGAGCACA
tcc-miR156bTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
tcc-miR156cTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
tcc-miR156dTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
tcc-miR156gTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
vun-miR156aTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
vvi-miR156bTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
vvi-miR156cTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
vvi-miR156dTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
zma-miR156a-5pTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
zma-miR156b-5pTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
zma-miR156cTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
zma-miR156d-5pTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
zma-miR156e-5pTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
zma-miR156f-5pTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
zma-miR156g-5pTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
zma-miR156h-5pTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
zma-miR156i-5pTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC
zma-miR156l-5pTGACAGAAGAGAGTGAGCA-
|||||||||||||||||||x
TGACAGAAGAGAGTGAGCAC

Precursor of miRNA M00002

genome hit of precursorprecursor
sequence IDstartendstrand sequencefolding
energy
miRNA*structure
SL2.40ch07 48503782 48503866 + UGACAGAAGAGAGUGAGCAC
ACAUGGUUCUUUCAUGGAUU
AUUCCCCAUGUUUAAAAGCU
CUGCGUGCUCACGCUCUAUC
UGUCA
-40.90 NA structure
SL2.40ch07 324087 324172 + UGACAGAAGAGAGUGAGCAC
ACGAUGUCAAAUUGUAUAAA
UAUAUAUACAAUUGUCAUUU
GCGUGUGCUCACUUCUCAUU
CUGUCA
-44.80 NA structure
SL2.40ch08 49276200 49276286 + UGACAGAAGAGAGUGAGCAC
ACAUGGUGUUUUCUAGCAUG
AUGUUUUACAUGCUUGAAAC
UAUGUGUGCUCACUGCUCUA
UCUGUCA
-50.90 NA structure
SL2.40ch08 49143878 49143793 - UGACAGAAGAGAGUGAGCAC
AUAUGGUCUUUUCAAGCAUG
AUGUUUACAUGCUUGAAGCU
AUGCGUGCUCACUUCUCUAU
CUGUCA
-48.50 NA structure
SL2.40ch08 49143813 49143605 - UGCUCACUUCUCUAUCUGUC
ACCCCCCAAUCCCCAACUGC
UUUCUCUUUGUCUGUUUAUA
UUUUUUUUUGUUUAUUUAUG
AUGUUUGAUCAUAUUAAUUG
GAUUAAUUCAUAAGCUUAUG
CUAAGACUUUGACUUCACUU
GUCUUUAUUUUUGGGUCAAG
CAUUGAGUGGGAUGUAAAAC
CAAAGGGAGGUGACAGAAGA
GAGUGAGCA
-64.60 NA structure
SL2.40ch08 49143139 49143054 - UGACAGAAGAGAGUGAGCAC
ACAUGAUGUUUUCUCGCAUG
AUGUUUACAUGCUUGAAACU
AUGCGUGCUCACUGCUCUAU
CUGUCA
-41.30 NA structure
SL2.40ch08 49122968 49122875 - UGACAGAAGAGAGUGAGCAC
ACAUGGCGUUUUCUGGCAUG
AUGUUUAUAUAUAUAUAUGC
UUGAAACUAUGUGUGCUCAC
UGCUCUAUCUGUCA
-49.90 NA structure