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Tomato miRNA M00010
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| CUGACAGAAGAGAGUGAGCAC | 21 | miR156 | S14644992 | click here |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0739 | Solanum lycopersicum | Ailsa Craig | fruit, red ripe (52 days after anthesis) | 1 | 0.1 |
| S0735 | Solanum lycopersicum | Sunny | leaf , TSWV-infected | 88 | 6.49 |
| S0734 | Solanum lycopersicum | IL8-3-1 | seedlings, two-week-old | 2 | 1.54 |
| S0733 | Solanum lycopersicum | IL8-3 | seedlings, two-week-old | 4 | 3.03 |
| S0732 | Solanum lycopersicum | IL8-2-1 | seedlings, two-week-old | 1 | 0.71 |
| S0731 | Solanum lycopersicum | IL8-2 | seedlings, two-week-old | 4 | 2.95 |
| S0730 | Solanum lycopersicum | IL8-1-3 | seedlings, two-week-old | 5 | 3.12 |
| S0729 | Solanum lycopersicum | IL8-1D | seedlings, two-week-old | 5 | 3.19 |
| S0728 | Solanum lycopersicum | IL8-1-1 | seedlings, two-week-old | 4 | 2.64 |
| S0727 | Solanum lycopersicum | IL2-5 | seedlings, two-week-old | 4 | 2.45 |
| S0726 | Solanum lycopersicum | IL1-1 | seedlings, two-week-old | 2 | 1.2 |
| S0725 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate3 | 236 | 230.27 |
| S0724 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate2 | 126 | 73.56 |
| S0723 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate1 | 202 | 198.15 |
| S0722 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F1) | seedlings, two-week-old , replicate2 | 115 | 81.33 |
| S0721 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F1) | seedlings, two-week-old , replicate1 | 197 | 214.45 |
| S0720 | Solanum pennellii | LA716 | seedlings, two-week-old , replicate2 | 288 | 275.17 |
| S0719 | Solanum pennellii | LA716 | seedlings, two-week-old , replicate1 | 235 | 678.85 |
| S0718 | Solanum lycopersicum | M82 | seedlings, two-week-old , replicate2 | 4 | 2.79 |
| S0717 | Solanum lycopersicum | M82 | seedlings, two-week-old , replicate1 | 6 | 8.01 |
| S0716 | Solanum lycopersicum | MicroTom | fruit , 7 days post breaker | 9 | 3.76 |
| S0714 | Solanum lycopersicum | MicroTom | fruit , 3 days post breaker | 7 | 1.76 |
| S0707 | Solanum lycopersicum | MicroTom | flower bud, closed bud before flower blooming | 1 | 0.26 |
| S0371 | Solanum lycopersicum | Heinz 1706 | leaf | 3 | 0.9 |
Hits on known miRNAs
| hit miRNA | alignment |
|---|---|
| cme-miR156j | -CTGACAGAAGAGAGTGAGCAC xx|||||||||||||||||||| GTTGACAGAAGAGAGTGAGCAC |
| gma-miR156k | CTGACAGAAGAGAGTGAGCAC x|||||||||||||||||||| TTGACAGAAGAGAGTGAGCAC |
| gma-miR156n | CTGACAGAAGAGAGTGAGCAC x|||||||||||||||||||| TTGACAGAAGAGAGTGAGCAC |
| gma-miR156o | CTGACAGAAGAGAGTGAGCAC x|||||||||||||||||||| TTGACAGAAGAGAGTGAGCAC |
Precursor of miRNA M00010
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch07 | 324086 | 324173 | + | CUGACAGAAGAGAGUGAGCA CACGAUGUCAAAUUGUAUAA AUAUAUAUACAAUUGUCAUU UGCGUGUGCUCACUUCUCAU UCUGUCAG |
-47.30 | NA | structure |
