TFGD
Home Expression Metabolite sRNA Links Contact

Tomato miRNA M00012

sequenceLengthmiRNA familysRNA IDtarget
UUGACAGAAGAUAGAGAGCACU22miR156 S25349297click here

Digital expression

SampleNo. raw readsRPM
IDOrganismCultivarTissue
S0739 Solanum lycopersicum Ailsa Craig fruit, red ripe (52 days after anthesis) 6 0.58
S0738 Solanum lycopersicum Ailsa Craig fruit, breaker (42 days after anthesis) 2 0.27
S0737 Solanum lycopersicum Ailsa Craig fruit, mature green (39 days after anthesis) 6 0.7
S0736 Solanum lycopersicum Ailsa Craig fruit, immature (17 days after anthesis) 20 4.31
S0735 Solanum lycopersicum Sunny leaf , TSWV-infected 1008 74.35
S0716 Solanum lycopersicum MicroTom fruit , 7 days post breaker 7 2.93
S0715 Solanum lycopersicum MicroTom fruit , 5 days post breaker 2 2.05
S0714 Solanum lycopersicum MicroTom fruit , 3 days post breaker 16 4.03
S0713 Solanum lycopersicum MicroTom fruit , breaker stage 2 0.57
S0712 Solanum lycopersicum MicroTom fruit , mature green 36 9.21
S0711 Solanum lycopersicum MicroTom fruit , 11mm to 14mm in diameter 16 7.71
S0710 Solanum lycopersicum MicroTom fruit , 5mm to 7mm in diameter 1 0.83
S0709 Solanum lycopersicum MicroTom fruit , 1mm to 3mm in diameter 9 5.1
S0708 Solanum lycopersicum MicroTom flower, open 25 7.71
S0707 Solanum lycopersicum MicroTom flower bud, closed bud before flower blooming 121 31.77
S0373 Solanum lycopersicum Heinz 1706 fruit 16 4.79
S0372 Solanum lycopersicum Heinz 1706 flower 55 16.65
S0371 Solanum lycopersicum Heinz 1706 leaf 442 133.19

Hits on known miRNAs

hit miRNAalignment
gma-miR156fTTGACAGAAGATAGAGAGCACT
|||||||||||x|||||||||x
TTGACAGAAGAGAGAGAGCACA

Precursor of miRNA M00012

genome hit of precursorprecursor
sequence IDstartendstrand sequencefolding
energy		miRNA*structure
SL2.40ch06 39241775 39241676 - UUGACAGAAGAUAGAGAGCA
CUAAUGAUGAUAUGCUAAUU
UCAUUCAAUUUGGGCAGCAA
AAGCAUCUCAAUUCAUUUGU
GCUCUCUAUGCUUCUGUCAU
 -43.44 NA structure