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Tomato miRNA M00017
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| UUUGGAUUGAAGGGAGCUC | 19 | miR159 | S26397460 | click here |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0739 | Solanum lycopersicum | Ailsa Craig | fruit, red ripe (52 days after anthesis) | 10 | 0.97 |
| S0738 | Solanum lycopersicum | Ailsa Craig | fruit, breaker (42 days after anthesis) | 3 | 0.4 |
| S0737 | Solanum lycopersicum | Ailsa Craig | fruit, mature green (39 days after anthesis) | 7 | 0.82 |
| S0736 | Solanum lycopersicum | Ailsa Craig | fruit, immature (17 days after anthesis) | 12 | 2.58 |
| S0735 | Solanum lycopersicum | Sunny | leaf , TSWV-infected | 13 | 0.96 |
| S0716 | Solanum lycopersicum | MicroTom | fruit , 7 days post breaker | 8 | 3.35 |
| S0715 | Solanum lycopersicum | MicroTom | fruit , 5 days post breaker | 4 | 4.09 |
| S0714 | Solanum lycopersicum | MicroTom | fruit , 3 days post breaker | 97 | 24.42 |
| S0713 | Solanum lycopersicum | MicroTom | fruit , breaker stage | 22 | 6.24 |
| S0712 | Solanum lycopersicum | MicroTom | fruit , mature green | 48 | 12.28 |
| S0711 | Solanum lycopersicum | MicroTom | fruit , 11mm to 14mm in diameter | 476 | 229.29 |
| S0710 | Solanum lycopersicum | MicroTom | fruit , 5mm to 7mm in diameter | 287 | 238.42 |
| S0709 | Solanum lycopersicum | MicroTom | fruit , 1mm to 3mm in diameter | 483 | 273.86 |
| S0708 | Solanum lycopersicum | MicroTom | flower, open | 33 | 10.18 |
| S0707 | Solanum lycopersicum | MicroTom | flower bud, closed bud before flower blooming | 72 | 18.9 |
| S0373 | Solanum lycopersicum | Heinz 1706 | fruit | 28 | 8.38 |
| S0372 | Solanum lycopersicum | Heinz 1706 | flower | 7 | 2.12 |
| S0371 | Solanum lycopersicum | Heinz 1706 | leaf | 21 | 6.33 |
Hits on known miRNAs
| hit miRNA | alignment |
|---|---|
| ahy-miR159 | TTTGGATTGAAGGGAGCTC-- |||||||||||||||||||xx TTTGGATTGAAGGGAGCTCTA |
| aly-miR159a-3p | TTTGGATTGAAGGGAGCTC-- |||||||||||||||||||xx TTTGGATTGAAGGGAGCTCTA |
| aly-miR159b-3p | TTTGGATTGAAGGGAGCTC-- |||||||||||||||||||xx TTTGGATTGAAGGGAGCTCTT |
| aly-miR159c-3p | TTTGGATTGAAGGGAGCTC-- |||||||||||||||||||xx TTTGGATTGAAGGGAGCTCCT |
| ath-miR159a | TTTGGATTGAAGGGAGCTC-- |||||||||||||||||||xx TTTGGATTGAAGGGAGCTCTA |
| ath-miR159b | TTTGGATTGAAGGGAGCTC-- |||||||||||||||||||xx TTTGGATTGAAGGGAGCTCTT |
| ath-miR159c | TTTGGATTGAAGGGAGCTC-- |||||||||||||||||||xx TTTGGATTGAAGGGAGCTCCT |
| bna-miR159 | TTTGGATTGAAGGGAGCTC-- |||||||||||||||||||xx TTTGGATTGAAGGGAGCTCTA |
| bra-miR159a | TTTGGATTGAAGGGAGCTC-- |||||||||||||||||||xx TTTGGATTGAAGGGAGCTCTA |
| cme-miR159a | TTTGGATTGAAGGGAGCTC-- |||||||||||||||||||xx TTTGGATTGAAGGGAGCTCTA |
| csi-miR159 | TTTGGATTGAAGGGAGCTC-- |||||||||||||||||||xx TTTGGATTGAAGGGAGCTCTA |
| far-miR159 | TTTGGATTGAAGGGAGCTC-- |||||||||||||||||||xx TTTGGATTGAAGGGAGCTCTG |
| gma-miR159a-3p | TTTGGATTGAAGGGAGCTC-- |||||||||||||||||||xx TTTGGATTGAAGGGAGCTCTA |
| gma-miR159e-3p | TTTGGATTGAAGGGAGCTC-- |||||||||||||||||||xx TTTGGATTGAAGGGAGCTCTA |
| hbr-miR159a | TTTGGATTGAAGGGAGCTC-- |||||||||||||||||||xx TTTGGATTGAAGGGAGCTCTA |
| htu-miR159a | TTTGGATTGAAGGGAGCTC-- |||||||||||||||||||xx TTTGGATTGAAGGGAGCTCTA |
| hvu-miR159a | TTTGGATTGAAGGGAGCTC-- |||||||||||||||||||xx TTTGGATTGAAGGGAGCTCTG |
| hvu-miR159b | TTTGGATTGAAGGGAGCTC-- |||||||||||||||||||xx TTTGGATTGAAGGGAGCTCTG |
| mes-miR159 | TTTGGATTGAAGGGAGCTC-- |||||||||||||||||||xx TTTGGATTGAAGGGAGCTCTA |
| mtr-miR159a | TTTGGATTGAAGGGAGCTC-- |||||||||||||||||||xx TTTGGATTGAAGGGAGCTCTA |
| nta-miR159 | TTTGGATTGAAGGGAGCTC-- |||||||||||||||||||xx TTTGGATTGAAGGGAGCTCTA |
| osa-miR159a.1 | TTTGGATTGAAGGGAGCTC-- |||||||||||||||||||xx TTTGGATTGAAGGGAGCTCTG |
| osa-miR159b | TTTGGATTGAAGGGAGCTC-- |||||||||||||||||||xx TTTGGATTGAAGGGAGCTCTG |
| ptc-miR159a | TTTGGATTGAAGGGAGCTC-- |||||||||||||||||||xx TTTGGATTGAAGGGAGCTCTA |
| ptc-miR159b | TTTGGATTGAAGGGAGCTC-- |||||||||||||||||||xx TTTGGATTGAAGGGAGCTCTA |
| ptc-miR159c | TTTGGATTGAAGGGAGCTC-- |||||||||||||||||||xx TTTGGATTGAAGGGAGCTCTA |
| pvu-miR159a.1 | TTTGGATTGAAGGGAGCTC-- |||||||||||||||||||xx TTTGGATTGAAGGGAGCTCTA |
| rco-miR159 | TTTGGATTGAAGGGAGCTC-- |||||||||||||||||||xx TTTGGATTGAAGGGAGCTCTA |
| sbi-miR159a | TTTGGATTGAAGGGAGCTC-- |||||||||||||||||||xx TTTGGATTGAAGGGAGCTCTG |
| sly-miR159 | TTTGGATTGAAGGGAGCTC-- |||||||||||||||||||xx TTTGGATTGAAGGGAGCTCTA |
| sof-miR159a | TTTGGATTGAAGGGAGCTC-- |||||||||||||||||||xx TTTGGATTGAAGGGAGCTCTG |
| sof-miR159b | TTTGGATTGAAGGGAGCTC-- |||||||||||||||||||xx TTTGGATTGAAGGGAGCTCTG |
| sof-miR159d | TTTGGATTGAAGGGAGCTC-- |||||||||||||||||||xx TTTGGATTGAAGGGAGCTCTG |
| ssp-miR159a | TTTGGATTGAAGGGAGCTC-- |||||||||||||||||||xx TTTGGATTGAAGGGAGCTCTG |
| tae-miR159a | TTTGGATTGAAGGGAGCTC-- |||||||||||||||||||xx TTTGGATTGAAGGGAGCTCTG |
| tae-miR159b | TTTGGATTGAAGGGAGCTC-- |||||||||||||||||||xx TTTGGATTGAAGGGAGCTCTG |
| vvi-miR159c | TTTGGATTGAAGGGAGCTC-- |||||||||||||||||||xx TTTGGATTGAAGGGAGCTCTA |
| zma-miR159a-3p | TTTGGATTGAAGGGAGCTC-- |||||||||||||||||||xx TTTGGATTGAAGGGAGCTCTG |
| zma-miR159b-3p | TTTGGATTGAAGGGAGCTC-- |||||||||||||||||||xx TTTGGATTGAAGGGAGCTCTG |
| zma-miR159f-3p | TTTGGATTGAAGGGAGCTC-- |||||||||||||||||||xx TTTGGATTGAAGGGAGCTCTG |
| zma-miR159j-3p | TTTGGATTGAAGGGAGCTC-- |||||||||||||||||||xx TTTGGATTGAAGGGAGCTCTG |
| zma-miR159k-3p | TTTGGATTGAAGGGAGCTC-- |||||||||||||||||||xx TTTGGATTGAAGGGAGCTCTG |
Precursor of miRNA M00017
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch03 | 61786067 | 61786240 | + | GAGCUCCUUGAAGUCCAACA GAAGAUCUAACAGGUUAGAU UGAGCUGCUGACCUAUGGAU UCCUCAGCCCUAUCUAUUUA UGAUUUCAAACAUAUAGAUA GGUUUGUGGGUUUGCAUAUG UCAGGAGCUUUAUUUUACCC UUUGUUUGAUCAUUUUUUGG AUUGAAGGGAGCUC |
-76.40 | miRNA* | structure |
