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Tomato miRNA M00018
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| UUUGGAUUGAAGGGAGCUCU | 20 | miR159 | S26397461 | click here |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0739 | Solanum lycopersicum | Ailsa Craig | fruit, red ripe (52 days after anthesis) | 41 | 4 |
| S0738 | Solanum lycopersicum | Ailsa Craig | fruit, breaker (42 days after anthesis) | 26 | 3.45 |
| S0737 | Solanum lycopersicum | Ailsa Craig | fruit, mature green (39 days after anthesis) | 89 | 10.4 |
| S0736 | Solanum lycopersicum | Ailsa Craig | fruit, immature (17 days after anthesis) | 124 | 26.7 |
| S0735 | Solanum lycopersicum | Sunny | leaf , TSWV-infected | 30 | 2.21 |
| S0716 | Solanum lycopersicum | MicroTom | fruit , 7 days post breaker | 1 | 0.42 |
| S0714 | Solanum lycopersicum | MicroTom | fruit , 3 days post breaker | 53 | 13.34 |
| S0713 | Solanum lycopersicum | MicroTom | fruit , breaker stage | 7 | 1.98 |
| S0712 | Solanum lycopersicum | MicroTom | fruit , mature green | 19 | 4.86 |
| S0711 | Solanum lycopersicum | MicroTom | fruit , 11mm to 14mm in diameter | 279 | 134.39 |
| S0710 | Solanum lycopersicum | MicroTom | fruit , 5mm to 7mm in diameter | 180 | 149.53 |
| S0709 | Solanum lycopersicum | MicroTom | fruit , 1mm to 3mm in diameter | 272 | 154.22 |
| S0708 | Solanum lycopersicum | MicroTom | flower, open | 32 | 9.87 |
| S0707 | Solanum lycopersicum | MicroTom | flower bud, closed bud before flower blooming | 48 | 12.6 |
| S0373 | Solanum lycopersicum | Heinz 1706 | fruit | 8 | 2.39 |
| S0372 | Solanum lycopersicum | Heinz 1706 | flower | 4 | 1.21 |
| S0371 | Solanum lycopersicum | Heinz 1706 | leaf | 9 | 2.71 |
Hits on known miRNAs
| hit miRNA | alignment |
|---|---|
| ahy-miR159 | TTTGGATTGAAGGGAGCTCT- ||||||||||||||||||||x TTTGGATTGAAGGGAGCTCTA |
| aly-miR159a-3p | TTTGGATTGAAGGGAGCTCT- ||||||||||||||||||||x TTTGGATTGAAGGGAGCTCTA |
| aly-miR159b-3p | TTTGGATTGAAGGGAGCTCT- ||||||||||||||||||||x TTTGGATTGAAGGGAGCTCTT |
| ath-miR159a | TTTGGATTGAAGGGAGCTCT- ||||||||||||||||||||x TTTGGATTGAAGGGAGCTCTA |
| ath-miR159b | TTTGGATTGAAGGGAGCTCT- ||||||||||||||||||||x TTTGGATTGAAGGGAGCTCTT |
| bna-miR159 | TTTGGATTGAAGGGAGCTCT- ||||||||||||||||||||x TTTGGATTGAAGGGAGCTCTA |
| bra-miR159a | TTTGGATTGAAGGGAGCTCT- ||||||||||||||||||||x TTTGGATTGAAGGGAGCTCTA |
| cme-miR159a | TTTGGATTGAAGGGAGCTCT- ||||||||||||||||||||x TTTGGATTGAAGGGAGCTCTA |
| csi-miR159 | TTTGGATTGAAGGGAGCTCT- ||||||||||||||||||||x TTTGGATTGAAGGGAGCTCTA |
| far-miR159 | TTTGGATTGAAGGGAGCTCT- ||||||||||||||||||||x TTTGGATTGAAGGGAGCTCTG |
| gma-miR159a-3p | TTTGGATTGAAGGGAGCTCT- ||||||||||||||||||||x TTTGGATTGAAGGGAGCTCTA |
| gma-miR159e-3p | TTTGGATTGAAGGGAGCTCT- ||||||||||||||||||||x TTTGGATTGAAGGGAGCTCTA |
| hbr-miR159a | TTTGGATTGAAGGGAGCTCT- ||||||||||||||||||||x TTTGGATTGAAGGGAGCTCTA |
| htu-miR159a | TTTGGATTGAAGGGAGCTCT- ||||||||||||||||||||x TTTGGATTGAAGGGAGCTCTA |
| hvu-miR159a | TTTGGATTGAAGGGAGCTCT- ||||||||||||||||||||x TTTGGATTGAAGGGAGCTCTG |
| hvu-miR159b | TTTGGATTGAAGGGAGCTCT- ||||||||||||||||||||x TTTGGATTGAAGGGAGCTCTG |
| mes-miR159 | TTTGGATTGAAGGGAGCTCT- ||||||||||||||||||||x TTTGGATTGAAGGGAGCTCTA |
| mtr-miR159a | TTTGGATTGAAGGGAGCTCT- ||||||||||||||||||||x TTTGGATTGAAGGGAGCTCTA |
| nta-miR159 | TTTGGATTGAAGGGAGCTCT- ||||||||||||||||||||x TTTGGATTGAAGGGAGCTCTA |
| osa-miR159a.1 | TTTGGATTGAAGGGAGCTCT- ||||||||||||||||||||x TTTGGATTGAAGGGAGCTCTG |
| osa-miR159b | TTTGGATTGAAGGGAGCTCT- ||||||||||||||||||||x TTTGGATTGAAGGGAGCTCTG |
| ptc-miR159a | TTTGGATTGAAGGGAGCTCT- ||||||||||||||||||||x TTTGGATTGAAGGGAGCTCTA |
| ptc-miR159b | TTTGGATTGAAGGGAGCTCT- ||||||||||||||||||||x TTTGGATTGAAGGGAGCTCTA |
| ptc-miR159c | TTTGGATTGAAGGGAGCTCT- ||||||||||||||||||||x TTTGGATTGAAGGGAGCTCTA |
| pvu-miR159a.1 | TTTGGATTGAAGGGAGCTCT- ||||||||||||||||||||x TTTGGATTGAAGGGAGCTCTA |
| rco-miR159 | TTTGGATTGAAGGGAGCTCT- ||||||||||||||||||||x TTTGGATTGAAGGGAGCTCTA |
| sbi-miR159a | TTTGGATTGAAGGGAGCTCT- ||||||||||||||||||||x TTTGGATTGAAGGGAGCTCTG |
| sly-miR159 | TTTGGATTGAAGGGAGCTCT- ||||||||||||||||||||x TTTGGATTGAAGGGAGCTCTA |
| sof-miR159a | TTTGGATTGAAGGGAGCTCT- ||||||||||||||||||||x TTTGGATTGAAGGGAGCTCTG |
| sof-miR159b | TTTGGATTGAAGGGAGCTCT- ||||||||||||||||||||x TTTGGATTGAAGGGAGCTCTG |
| sof-miR159d | TTTGGATTGAAGGGAGCTCT- ||||||||||||||||||||x TTTGGATTGAAGGGAGCTCTG |
| ssp-miR159a | TTTGGATTGAAGGGAGCTCT- ||||||||||||||||||||x TTTGGATTGAAGGGAGCTCTG |
| tae-miR159a | TTTGGATTGAAGGGAGCTCT- ||||||||||||||||||||x TTTGGATTGAAGGGAGCTCTG |
| tae-miR159b | TTTGGATTGAAGGGAGCTCT- ||||||||||||||||||||x TTTGGATTGAAGGGAGCTCTG |
| vvi-miR159c | TTTGGATTGAAGGGAGCTCT- ||||||||||||||||||||x TTTGGATTGAAGGGAGCTCTA |
| zma-miR159a-3p | TTTGGATTGAAGGGAGCTCT- ||||||||||||||||||||x TTTGGATTGAAGGGAGCTCTG |
| zma-miR159b-3p | TTTGGATTGAAGGGAGCTCT- ||||||||||||||||||||x TTTGGATTGAAGGGAGCTCTG |
| zma-miR159f-3p | TTTGGATTGAAGGGAGCTCT- ||||||||||||||||||||x TTTGGATTGAAGGGAGCTCTG |
| zma-miR159j-3p | TTTGGATTGAAGGGAGCTCT- ||||||||||||||||||||x TTTGGATTGAAGGGAGCTCTG |
| zma-miR159k-3p | TTTGGATTGAAGGGAGCTCT- ||||||||||||||||||||x TTTGGATTGAAGGGAGCTCTG |
Precursor of miRNA M00018
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch03 | 61786066 | 61786241 | + | GGAGCUCCUUGAAGUCCAAC AGAAGAUCUAACAGGUUAGA UUGAGCUGCUGACCUAUGGA UUCCUCAGCCCUAUCUAUUU AUGAUUUCAAACAUAUAGAU AGGUUUGUGGGUUUGCAUAU GUCAGGAGCUUUAUUUUACC CUUUGUUUGAUCAUUUUUUG GAUUGAAGGGAGCUCU |
-78.00 | miRNA* | structure |
