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Tomato miRNA M00020
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| GGAGGCAGCGGUUCAUCGAUC | 21 | miR162 | S17879556 | NA |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0739 | Solanum lycopersicum | Ailsa Craig | fruit, red ripe (52 days after anthesis) | 685 | 66.75 |
| S0738 | Solanum lycopersicum | Ailsa Craig | fruit, breaker (42 days after anthesis) | 1217 | 161.31 |
| S0737 | Solanum lycopersicum | Ailsa Craig | fruit, mature green (39 days after anthesis) | 819 | 95.68 |
| S0736 | Solanum lycopersicum | Ailsa Craig | fruit, immature (17 days after anthesis) | 6 | 1.29 |
| S0735 | Solanum lycopersicum | Sunny | leaf , TSWV-infected | 69 | 5.09 |
| S0716 | Solanum lycopersicum | MicroTom | fruit , 7 days post breaker | 8 | 3.35 |
| S0714 | Solanum lycopersicum | MicroTom | fruit , 3 days post breaker | 10 | 2.52 |
| S0713 | Solanum lycopersicum | MicroTom | fruit , breaker stage | 1 | 0.28 |
| S0712 | Solanum lycopersicum | MicroTom | fruit , mature green | 14 | 3.58 |
| S0711 | Solanum lycopersicum | MicroTom | fruit , 11mm to 14mm in diameter | 31 | 14.93 |
| S0710 | Solanum lycopersicum | MicroTom | fruit , 5mm to 7mm in diameter | 33 | 27.41 |
| S0709 | Solanum lycopersicum | MicroTom | fruit , 1mm to 3mm in diameter | 19 | 10.77 |
| S0708 | Solanum lycopersicum | MicroTom | flower, open | 105 | 32.4 |
| S0707 | Solanum lycopersicum | MicroTom | flower bud, closed bud before flower blooming | 44 | 11.55 |
| S0373 | Solanum lycopersicum | Heinz 1706 | fruit | 3 | 0.9 |
| S0372 | Solanum lycopersicum | Heinz 1706 | flower | 7 | 2.12 |
| S0371 | Solanum lycopersicum | Heinz 1706 | leaf | 6 | 1.81 |
Hits on known miRNAs
| hit miRNA | alignment |
|---|---|
| aly-miR162a-5p | GGAGGCAGCGGTTCATCGATC ||||||||||||||||||||| GGAGGCAGCGGTTCATCGATC |
| aly-miR162b-5p | GGAGGCAGCGGTTCATCGATC ||||||||||||||||||||| GGAGGCAGCGGTTCATCGATC |
| csi-miR162-5p | -GGAGGCAGCGGTTCATCGATC x||||||||||||||||||||| TGGAGGCAGCGGTTCATCGATC |
Precursor of miRNA M00020
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch03 | 58491545 | 58491623 | + | GGAGGCAGCGGUUCAUCGAU CUGUUCCCUGAAAAGCGAUA AAUACAGCAACAGGAAGCGA UCGAUAAACCUCUGCAUCC |
-32.90 | NA | structure |
| SL2.40ch06 | 39463120 | 39463213 | + | GGAGGCAGCGGUUCAUCGAU CCGUUCCCUGGAAGCUGAAU AUAUAUAUACGCAAAAAUAC AGCAAAAGGAAUCGGUCGAU AAACCUCUGCAUCC |
-32.85 | NA | structure |
