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Tomato miRNA M00022
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| UGGAGAAGCAGGGCACGUG | 19 | miR164 | S23655828 | click here |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0739 | Solanum lycopersicum | Ailsa Craig | fruit, red ripe (52 days after anthesis) | 79 | 7.7 |
| S0738 | Solanum lycopersicum | Ailsa Craig | fruit, breaker (42 days after anthesis) | 110 | 14.58 |
| S0737 | Solanum lycopersicum | Ailsa Craig | fruit, mature green (39 days after anthesis) | 29 | 3.39 |
| S0735 | Solanum lycopersicum | Sunny | leaf , TSWV-infected | 1 | 0.07 |
| S0716 | Solanum lycopersicum | MicroTom | fruit , 7 days post breaker | 954 | 398.93 |
| S0715 | Solanum lycopersicum | MicroTom | fruit , 5 days post breaker | 357 | 365.05 |
| S0714 | Solanum lycopersicum | MicroTom | fruit , 3 days post breaker | 9516 | 2395.22 |
| S0713 | Solanum lycopersicum | MicroTom | fruit , breaker stage | 159 | 45.06 |
| S0712 | Solanum lycopersicum | MicroTom | fruit , mature green | 369 | 94.4 |
| S0711 | Solanum lycopersicum | MicroTom | fruit , 11mm to 14mm in diameter | 182 | 87.67 |
| S0710 | Solanum lycopersicum | MicroTom | fruit , 5mm to 7mm in diameter | 57 | 47.35 |
| S0709 | Solanum lycopersicum | MicroTom | fruit , 1mm to 3mm in diameter | 53 | 30.05 |
| S0708 | Solanum lycopersicum | MicroTom | flower, open | 198 | 61.09 |
| S0707 | Solanum lycopersicum | MicroTom | flower bud, closed bud before flower blooming | 446 | 117.09 |
| S0373 | Solanum lycopersicum | Heinz 1706 | fruit | 17 | 5.09 |
| S0372 | Solanum lycopersicum | Heinz 1706 | flower | 11 | 3.33 |
| S0371 | Solanum lycopersicum | Heinz 1706 | leaf | 1 | 0.3 |
Hits on known miRNAs
| hit miRNA | alignment |
|---|---|
| aly-miR164a-5p | TGGAGAAGCAGGGCACGTG-- |||||||||||||||||||xx TGGAGAAGCAGGGCACGTGCA |
| aly-miR164b-5p | TGGAGAAGCAGGGCACGTG-- |||||||||||||||||||xx TGGAGAAGCAGGGCACGTGCA |
| aly-miR164c-5p | TGGAGAAGCAGGGCACGTG-- |||||||||||||||||||xx TGGAGAAGCAGGGCACGTGCG |
| ath-miR164a | TGGAGAAGCAGGGCACGTG-- |||||||||||||||||||xx TGGAGAAGCAGGGCACGTGCA |
| ath-miR164b | TGGAGAAGCAGGGCACGTG-- |||||||||||||||||||xx TGGAGAAGCAGGGCACGTGCA |
| ath-miR164c | TGGAGAAGCAGGGCACGTG-- |||||||||||||||||||xx TGGAGAAGCAGGGCACGTGCG |
| bdi-miR164a | TGGAGAAGCAGGGCACGTG-- |||||||||||||||||||xx TGGAGAAGCAGGGCACGTGCA |
| bdi-miR164b | TGGAGAAGCAGGGCACGTG-- |||||||||||||||||||xx TGGAGAAGCAGGGCACGTGCA |
| bdi-miR164c | TGGAGAAGCAGGGCACGTG-- |||||||||||||||||||xx TGGAGAAGCAGGGCACGTGCT |
| bdi-miR164e | TGGAGAAGCAGGGCACGTG-- |||||||||||||||||||xx TGGAGAAGCAGGGCACGTGCA |
| bna-miR164a | TGGAGAAGCAGGGCACGTG-- |||||||||||||||||||xx TGGAGAAGCAGGGCACGTGCA |
| bna-miR164b | TGGAGAAGCAGGGCACGTG-- |||||||||||||||||||xx TGGAGAAGCAGGGCACGTGCG |
| bna-miR164c | TGGAGAAGCAGGGCACGTG-- |||||||||||||||||||xx TGGAGAAGCAGGGCACGTGCG |
| bna-miR164d | TGGAGAAGCAGGGCACGTG-- |||||||||||||||||||xx TGGAGAAGCAGGGCACGTGCG |
| bra-miR164a | TGGAGAAGCAGGGCACGTG-- |||||||||||||||||||xx TGGAGAAGCAGGGCACGTGCA |
| cme-miR164a | TGGAGAAGCAGGGCACGTG-- |||||||||||||||||||xx TGGAGAAGCAGGGCACGTGCT |
| cme-miR164c | TGGAGAAGCAGGGCACGTG-- |||||||||||||||||||xx TGGAGAAGCAGGGCACGTGCA |
| cme-miR164d | TGGAGAAGCAGGGCACGTG-- |||||||||||||||||||xx TGGAGAAGCAGGGCACGTGCA |
| csi-miR164 | TGGAGAAGCAGGGCACGTG-- |||||||||||||||||||xx TGGAGAAGCAGGGCACGTGCA |
| ctr-miR164 | TGGAGAAGCAGGGCACGTG-- |||||||||||||||||||xx TGGAGAAGCAGGGCACGTGCA |
| ghr-miR164 | TGGAGAAGCAGGGCACGTG-- |||||||||||||||||||xx TGGAGAAGCAGGGCACGTGCA |
| gma-miR164a | TGGAGAAGCAGGGCACGTG-- |||||||||||||||||||xx TGGAGAAGCAGGGCACGTGCA |
| gma-miR164b | TGGAGAAGCAGGGCACGTG- |||||||||||||||||||x TGGAGAAGCAGGGCACGTGC |
| gma-miR164c | TGGAGAAGCAGGGCACGTG- |||||||||||||||||||x TGGAGAAGCAGGGCACGTGC |
| gma-miR164d | TGGAGAAGCAGGGCACGTG- |||||||||||||||||||x TGGAGAAGCAGGGCACGTGC |
| gma-miR164e | TGGAGAAGCAGGGCACGTG-- |||||||||||||||||||xx TGGAGAAGCAGGGCACGTGCA |
| gma-miR164f | TGGAGAAGCAGGGCACGTG-- |||||||||||||||||||xx TGGAGAAGCAGGGCACGTGCA |
| gma-miR164g | TGGAGAAGCAGGGCACGTG-- |||||||||||||||||||xx TGGAGAAGCAGGGCACGTGCA |
| gma-miR164h | TGGAGAAGCAGGGCACGTG-- |||||||||||||||||||xx TGGAGAAGCAGGGCACGTGCA |
| gma-miR164i | TGGAGAAGCAGGGCACGTG-- |||||||||||||||||||xx TGGAGAAGCAGGGCACGTGCA |
| gma-miR164j | TGGAGAAGCAGGGCACGTG-- |||||||||||||||||||xx TGGAGAAGCAGGGCACGTGCA |
| gma-miR164k | TGGAGAAGCAGGGCACGTG-- |||||||||||||||||||xx TGGAGAAGCAGGGCACGTGCA |
| hci-miR164a | TGGAGAAGCAGGGCACGTG-- |||||||||||||||||||xx TGGAGAAGCAGGGCACGTGAA |
| mdm-miR164b | TGGAGAAGCAGGGCACGTG-- |||||||||||||||||||xx TGGAGAAGCAGGGCACGTGCA |
| mdm-miR164c | TGGAGAAGCAGGGCACGTG-- |||||||||||||||||||xx TGGAGAAGCAGGGCACGTGCA |
| mdm-miR164d | TGGAGAAGCAGGGCACGTG-- |||||||||||||||||||xx TGGAGAAGCAGGGCACGTGCA |
| mdm-miR164e | TGGAGAAGCAGGGCACGTG-- |||||||||||||||||||xx TGGAGAAGCAGGGCACGTGCA |
| mdm-miR164f | TGGAGAAGCAGGGCACGTG-- |||||||||||||||||||xx TGGAGAAGCAGGGCACGTGCA |
| mtr-miR164a | TGGAGAAGCAGGGCACGTG-- |||||||||||||||||||xx TGGAGAAGCAGGGCACGTGCA |
| mtr-miR164b | TGGAGAAGCAGGGCACGTG-- |||||||||||||||||||xx TGGAGAAGCAGGGCACGTGCA |
| mtr-miR164c | TGGAGAAGCAGGGCACGTG-- |||||||||||||||||||xx TGGAGAAGCAGGGCACGTGCA |
| nta-miR164a | TGGAGAAGCAGGGCACGTG-- |||||||||||||||||||xx TGGAGAAGCAGGGCACGTGCA |
| nta-miR164b | TGGAGAAGCAGGGCACGTG-- |||||||||||||||||||xx TGGAGAAGCAGGGCACGTGCA |
| osa-miR164a | TGGAGAAGCAGGGCACGTG-- |||||||||||||||||||xx TGGAGAAGCAGGGCACGTGCA |
| osa-miR164b | TGGAGAAGCAGGGCACGTG-- |||||||||||||||||||xx TGGAGAAGCAGGGCACGTGCA |
| osa-miR164d | TGGAGAAGCAGGGCACGTG-- |||||||||||||||||||xx TGGAGAAGCAGGGCACGTGCT |
| osa-miR164e | TGGAGAAGCAGGGCACGTG-- |||||||||||||||||||xx TGGAGAAGCAGGGCACGTGAG |
| osa-miR164f | TGGAGAAGCAGGGCACGTG-- |||||||||||||||||||xx TGGAGAAGCAGGGCACGTGCA |
| ptc-miR164a | TGGAGAAGCAGGGCACGTG-- |||||||||||||||||||xx TGGAGAAGCAGGGCACGTGCA |
| ptc-miR164b | TGGAGAAGCAGGGCACGTG-- |||||||||||||||||||xx TGGAGAAGCAGGGCACGTGCA |
| ptc-miR164c | TGGAGAAGCAGGGCACGTG-- |||||||||||||||||||xx TGGAGAAGCAGGGCACGTGCA |
| ptc-miR164d | TGGAGAAGCAGGGCACGTG-- |||||||||||||||||||xx TGGAGAAGCAGGGCACGTGCA |
| ptc-miR164e | TGGAGAAGCAGGGCACGTG-- |||||||||||||||||||xx TGGAGAAGCAGGGCACGTGCA |
| rco-miR164a | TGGAGAAGCAGGGCACGTG-- |||||||||||||||||||xx TGGAGAAGCAGGGCACGTGCA |
| rco-miR164b | TGGAGAAGCAGGGCACGTG-- |||||||||||||||||||xx TGGAGAAGCAGGGCACGTGCA |
| rco-miR164c | TGGAGAAGCAGGGCACGTG-- |||||||||||||||||||xx TGGAGAAGCAGGGCACGTGCA |
| sbi-miR164a | TGGAGAAGCAGGGCACGTG-- |||||||||||||||||||xx TGGAGAAGCAGGGCACGTGCA |
| sbi-miR164b | TGGAGAAGCAGGGCACGTG-- |||||||||||||||||||xx TGGAGAAGCAGGGCACGTGCT |
| sbi-miR164d | TGGAGAAGCAGGGCACGTG-- |||||||||||||||||||xx TGGAGAAGCAGGGCACGTGCA |
| sbi-miR164e | TGGAGAAGCAGGGCACGTG-- |||||||||||||||||||xx TGGAGAAGCAGGGCACGTGCA |
| ssl-miR164a | TGGAGAAGCAGGGCACGTG-- |||||||||||||||||||xx TGGAGAAGCAGGGCACGTGCA |
| ssl-miR164b | TGGAGAAGCAGGGCACGTG-- |||||||||||||||||||xx TGGAGAAGCAGGGCACGTGCA |
| tae-miR164 | TGGAGAAGCAGGGCACGTG-- |||||||||||||||||||xx TGGAGAAGCAGGGCACGTGCA |
| tcc-miR164a | TGGAGAAGCAGGGCACGTG-- |||||||||||||||||||xx TGGAGAAGCAGGGCACGTGCA |
| tcc-miR164b | TGGAGAAGCAGGGCACGTG-- |||||||||||||||||||xx TGGAGAAGCAGGGCACGTGCA |
| vvi-miR164a | TGGAGAAGCAGGGCACGTG-- |||||||||||||||||||xx TGGAGAAGCAGGGCACGTGCA |
| vvi-miR164c | TGGAGAAGCAGGGCACGTG-- |||||||||||||||||||xx TGGAGAAGCAGGGCACGTGCA |
| vvi-miR164d | TGGAGAAGCAGGGCACGTG-- |||||||||||||||||||xx TGGAGAAGCAGGGCACGTGCA |
| zma-miR164a-5p | TGGAGAAGCAGGGCACGTG-- |||||||||||||||||||xx TGGAGAAGCAGGGCACGTGCA |
| zma-miR164b-5p | TGGAGAAGCAGGGCACGTG-- |||||||||||||||||||xx TGGAGAAGCAGGGCACGTGCA |
| zma-miR164c-5p | TGGAGAAGCAGGGCACGTG-- |||||||||||||||||||xx TGGAGAAGCAGGGCACGTGCA |
| zma-miR164d-5p | TGGAGAAGCAGGGCACGTG-- |||||||||||||||||||xx TGGAGAAGCAGGGCACGTGCA |
| zma-miR164f-5p | TGGAGAAGCAGGGCACGTG-- |||||||||||||||||||xx TGGAGAAGCAGGGCACGTGCT |
| zma-miR164g-5p | TGGAGAAGCAGGGCACGTG-- |||||||||||||||||||xx TGGAGAAGCAGGGCACGTGCA |
| zma-miR164h-5p | TGGAGAAGCAGGGCACGTG-- |||||||||||||||||||xx TGGAGAAGCAGGGCACGTGTG |
Precursor of miRNA M00022
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch09 | 7197977 | 7198136 | + | UGGAGAAGCAGGGCACGUGC AUUACUAACUCAUACGCAAG AUUUAUCGAUGUUUCGAAAA UUCUGCUAUCAUAGUACUGU AUUUUACAGCAAAUAGUGUU UGUACUUUACAUGUAUGUGA UAAAAUGAUGAGUUAGUUAU UCAUGUGCCUGUUUUCCCCA |
-58.00 | NA | structure |
| SL2.40ch01 | 81732061 | 81732152 | + | UGGAGAAGCAGGGCACGUGC AAAUUCUUGUAUUCGACAAU AUAUGCAUUACUAAUGGUAA UGCAUGAAUUUUGCACGUGU UCUCCUUCUCCA |
-46.80 | NA | structure |
