TFGD
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Tomato miRNA M00028

sequenceLengthmiRNA familysRNA IDtarget
GGACCAGGCUUCAUUCCCC19miR166 S17769336click here

Digital expression

SampleNo. raw readsRPM
IDOrganismCultivarTissue
S0739 Solanum lycopersicum Ailsa Craig fruit, red ripe (52 days after anthesis) 13 1.27
S0738 Solanum lycopersicum Ailsa Craig fruit, breaker (42 days after anthesis) 9 1.19
S0737 Solanum lycopersicum Ailsa Craig fruit, mature green (39 days after anthesis) 51 5.96
S0736 Solanum lycopersicum Ailsa Craig fruit, immature (17 days after anthesis) 205 44.15
S0735 Solanum lycopersicum Sunny leaf , TSWV-infected 151 11.14
S0734 Solanum lycopersicum IL8-3-1 seedlings, two-week-old 24 18.49
S0733 Solanum lycopersicum IL8-3 seedlings, two-week-old 17 12.9
S0732 Solanum lycopersicum IL8-2-1 seedlings, two-week-old 10 7.12
S0731 Solanum lycopersicum IL8-2 seedlings, two-week-old 10 7.36
S0730 Solanum lycopersicum IL8-1-3 seedlings, two-week-old 17 10.61
S0729 Solanum lycopersicum IL8-1D seedlings, two-week-old 36 22.93
S0728 Solanum lycopersicum IL8-1-1 seedlings, two-week-old 17 11.2
S0727 Solanum lycopersicum IL2-5 seedlings, two-week-old 37 22.62
S0726 Solanum lycopersicum IL1-1 seedlings, two-week-old 24 14.37
S0725 Solanum lycopersicum x S. pennellii M82 x LA716 (F2) seedlings, two-week-old , replicate3 1 0.98
S0724 Solanum lycopersicum x S. pennellii M82 x LA716 (F2) seedlings, two-week-old , replicate2 8 4.67
S0723 Solanum lycopersicum x S. pennellii M82 x LA716 (F2) seedlings, two-week-old , replicate1 1 0.98
S0722 Solanum lycopersicum x S. pennellii M82 x LA716 (F1) seedlings, two-week-old , replicate2 1 0.71
S0721 Solanum lycopersicum x S. pennellii M82 x LA716 (F1) seedlings, two-week-old , replicate1 11 11.97
S0720 Solanum pennellii LA716 seedlings, two-week-old , replicate2 7 6.69
S0719 Solanum pennellii LA716 seedlings, two-week-old , replicate1 10 28.89
S0718 Solanum lycopersicum M82 seedlings, two-week-old , replicate2 8 5.57
S0717 Solanum lycopersicum M82 seedlings, two-week-old , replicate1 2 2.67
S0716 Solanum lycopersicum MicroTom fruit , 7 days post breaker 20 8.36
S0715 Solanum lycopersicum MicroTom fruit , 5 days post breaker 4 4.09
S0714 Solanum lycopersicum MicroTom fruit , 3 days post breaker 85 21.39
S0713 Solanum lycopersicum MicroTom fruit , breaker stage 13 3.68
S0712 Solanum lycopersicum MicroTom fruit , mature green 89 22.77
S0711 Solanum lycopersicum MicroTom fruit , 11mm to 14mm in diameter 28 13.49
S0710 Solanum lycopersicum MicroTom fruit , 5mm to 7mm in diameter 9 7.48
S0709 Solanum lycopersicum MicroTom fruit , 1mm to 3mm in diameter 6 3.4
S0708 Solanum lycopersicum MicroTom flower, open 2 0.62
S0707 Solanum lycopersicum MicroTom flower bud, closed bud before flower blooming 51 13.39
S0373 Solanum lycopersicum Heinz 1706 fruit 691 206.83
S0372 Solanum lycopersicum Heinz 1706 flower 331 100.17
S0371 Solanum lycopersicum Heinz 1706 leaf 602 181.41

Hits on known miRNAs

hit miRNAalignment
aly-miR166a-3p--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
aly-miR166b-3p--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
aly-miR166c-3p--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
aly-miR166d-3p--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
aly-miR166e-3p--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
aly-miR166f-3p--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
aly-miR166g-3p--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
aqc-miR166b--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
aqc-miR166e--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
ath-miR166a--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
ath-miR166b--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
ath-miR166c--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
ath-miR166d--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
ath-miR166e--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
ath-miR166f--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
ath-miR166g--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
bdi-miR166a--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
bdi-miR166b--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
bdi-miR166c--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
bdi-miR166d--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
bna-miR166a--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
bna-miR166b--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
bna-miR166c--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
bna-miR166d--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
bna-miR166e--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
cme-miR166a--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
cme-miR166b--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
cme-miR166c--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
cme-miR166d--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
cme-miR166f--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
cme-miR166h--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
csi-miR166a--GGACCAGGCTTCATTCCCC-
xx|||||||||||||||||||x
TCGGACCAGGCTTCATTCCCCC
csi-miR166e-3p--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
ctr-miR166--GGACCAGGCTTCATTCCCC-
xx|||||||||||||||||||x
TCGGACCAGGCTTCATTCCCCC
dpr-miR166b--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
ghr-miR166b--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
gma-miR166a-3p--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
gma-miR166b--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
gma-miR166c-3p--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
gma-miR166d--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
gma-miR166e--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
gma-miR166f--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
gma-miR166g--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
gma-miR166i-3p--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
gma-miR166m-GGACCAGGCTTCATTCCCC
x|||||||||||||||||||
CGGACCAGGCTTCATTCCCC
gma-miR166n--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
gma-miR166o--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
hbr-miR166b--GGACCAGGCTTCATTCCCC-
xx|||||||||||||||||||x
TCGGACCAGGCTTCATTCCCCC
hpa-miR166a--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
hpe-miR166a--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
hvu-miR166a--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
hvu-miR166b--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
hvu-miR166c--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
mdm-miR166a--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
mdm-miR166b--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
mdm-miR166c--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
mdm-miR166d--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
mdm-miR166e--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
mdm-miR166f--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
mdm-miR166g--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
mdm-miR166h--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
mdm-miR166i--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
mes-miR166--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
mtr-miR166a--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
mtr-miR166e--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
mtr-miR166g--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
mtr-miR166h--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
nta-miR166a--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
nta-miR166b--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
nta-miR166c--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
nta-miR166d--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
nta-miR166e--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
nta-miR166f--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
nta-miR166g--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
nta-miR166h--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
osa-miR166a-3p--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
osa-miR166b-3p--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
osa-miR166c-3p--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
osa-miR166d-3p--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
osa-miR166f--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
osa-miR166n-3p--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
ppt-miR166a--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
ppt-miR166b--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
ppt-miR166c--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
ppt-miR166d--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
ppt-miR166e--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
ppt-miR166f--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
ppt-miR166g--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
ppt-miR166h--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
ppt-miR166i--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
pta-miR166a--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
pta-miR166b--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
ptc-miR166a--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
ptc-miR166b--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
ptc-miR166c--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
ptc-miR166d--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
ptc-miR166e--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
ptc-miR166f--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
ptc-miR166g--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
ptc-miR166h--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
ptc-miR166i--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
ptc-miR166j--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
ptc-miR166k--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
ptc-miR166l--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
ptc-miR166m--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
pvu-miR166a--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
rco-miR166a--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
rco-miR166b--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
rco-miR166c--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
rco-miR166d--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
rco-miR166e--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
sly-miR166a--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
sly-miR166b--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
smo-miR166a--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
smo-miR166b--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
smo-miR166c--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
ssl-miR166b--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
tcc-miR166a--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
tcc-miR166d--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
vvi-miR166c--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
vvi-miR166d--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
vvi-miR166e--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
vvi-miR166f--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
vvi-miR166g--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
vvi-miR166h--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC
zma-miR166a-3p--GGACCAGGCTTCATTCCCC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCCC

Precursor of miRNA M00028

genome hit of precursorprecursor
sequence IDstartendstrand sequencefolding
energy
miRNA*structure
SL2.40ch06 33130286 33130383 + GGGGAAUGUUGUUUGGUUCG
AAAUCAUUCAAACAAAUUAA
AAUUCAUGCAUCUCGAUGAU
CGAUGAAUUGAAUAAUUUCG
GACCAGGCUUCAUUCCCC
-41.10 NA structure
SL2.40ch08 2978426 2978512 + GGGGAAUGUUGUUUGGCUCG
AGGCCACCAACUUCAUCUAA
UGUGAGCAAACUCUUUGUUA
GUGUCGUCGGACCAGGCUUC
AUUCCCC
-33.50 NA structure
SL2.40ch03 293068 292997 - GGAGAAUGUUGUCUGGUUCG
UGACCAUAUAUCUUUCUUCA
CAUAAAUGAUCUCGGACCAG
GCUUCAUUCCCC
-27.50 NA structure
SL2.40ch09 64446824 64446634 - GGAGAAUGUUGUCUGGUUCG
AAAUCUUUCUAUAGAAAAAU
CAGUGGUGGAUUCAGUUAUG
AGUUUCAAGAUCGUUAAAUC
UUAUAUAUGUACAAAAAUAA
GUACAAUAUAUAUUUUUAGA
CCCUAAAAUGUCGAAUAUAU
AUUCUGAAUUCGUCAAUUUA
UUGAGUGAUUUCGGACCAGG
CUUCAUUCCCC
-58.80 NA structure
SL2.40ch06 2516389 2516289 - GGAGAAUGUCGUCUGGUUCG
AGAUCUUUCAUAAGAAAGGU
AAAUGAAUGACAAGUUUUCA
UAUAUGUAUCGUGAAUGAUU
UCGGACCAGGCUUCAUUCCC
C
-42.10 NA structure
SL2.40ch03 46023697 46023561 - GGGGAAUGUUGUUUGGCUCG
AAGUCAUUAUCUCAUUAUAG
AUCGAACCAAUCCAAUUUUA
UAUAUUCAAUCUAGUUUAAA
AUAUAUGUGAAUUACGAUGA
UGAUGAGAUAGUGUCUUCGG
ACCAGGCUUCAUUCCCC
-55.29 NA structure