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Tomato miRNA M00041
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| CAGCCAAGGAUGACUUGCCGA | 21 | miR169 | S13077490 | click here |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0734 | Solanum lycopersicum | IL8-3-1 | seedlings, two-week-old | 5 | 3.85 |
| S0732 | Solanum lycopersicum | IL8-2-1 | seedlings, two-week-old | 1 | 0.71 |
| S0728 | Solanum lycopersicum | IL8-1-1 | seedlings, two-week-old | 3 | 1.98 |
| S0727 | Solanum lycopersicum | IL2-5 | seedlings, two-week-old | 2 | 1.22 |
| S0726 | Solanum lycopersicum | IL1-1 | seedlings, two-week-old | 3 | 1.8 |
| S0725 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate3 | 116 | 113.18 |
| S0724 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate2 | 35 | 20.43 |
| S0723 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate1 | 53 | 51.99 |
| S0722 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F1) | seedlings, two-week-old , replicate2 | 5 | 3.54 |
| S0721 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F1) | seedlings, two-week-old , replicate1 | 54 | 58.78 |
| S0720 | Solanum pennellii | LA716 | seedlings, two-week-old , replicate2 | 35 | 33.44 |
| S0719 | Solanum pennellii | LA716 | seedlings, two-week-old , replicate1 | 7 | 20.22 |
| S0717 | Solanum lycopersicum | M82 | seedlings, two-week-old , replicate1 | 2 | 2.67 |
Hits on known miRNAs
| hit miRNA | alignment |
|---|---|
| aly-miR169a-5p | CAGCCAAGGATGACTTGCCGA ||||||||||||||||||||| CAGCCAAGGATGACTTGCCGA |
| ath-miR169a | CAGCCAAGGATGACTTGCCGA ||||||||||||||||||||| CAGCCAAGGATGACTTGCCGA |
| bdi-miR169a | CAGCCAAGGATGACTTGCCGA ||||||||||||||||||||| CAGCCAAGGATGACTTGCCGA |
| bna-miR169a | CAGCCAAGGATGACTTGCCGA ||||||||||||||||||||| CAGCCAAGGATGACTTGCCGA |
| bna-miR169b | CAGCCAAGGATGACTTGCCGA ||||||||||||||||||||| CAGCCAAGGATGACTTGCCGA |
| gma-miR169b | CAGCCAAGGATGACTTGCCGA ||||||||||||||||||||| CAGCCAAGGATGACTTGCCGA |
| mtr-miR169a | CAGCCAAGGATGACTTGCCGA ||||||||||||||||||||| CAGCCAAGGATGACTTGCCGA |
| mtr-miR169b | CAGCCAAGGATGACTTGCCGA ||||||||||||||||||||| CAGCCAAGGATGACTTGCCGA |
| nta-miR169a | CAGCCAAGGATGACTTGCCGA ||||||||||||||||||||| CAGCCAAGGATGACTTGCCGA |
| nta-miR169b | CAGCCAAGGATGACTTGCCGA ||||||||||||||||||||| CAGCCAAGGATGACTTGCCGA |
| nta-miR169c | CAGCCAAGGATGACTTGCCGA ||||||||||||||||||||| CAGCCAAGGATGACTTGCCGA |
| nta-miR169d | CAGCCAAGGATGACTTGCCGA ||||||||||||||||||||| CAGCCAAGGATGACTTGCCGA |
| nta-miR169e | CAGCCAAGGATGACTTGCCGA ||||||||||||||||||||| CAGCCAAGGATGACTTGCCGA |
| nta-miR169f | CAGCCAAGGATGACTTGCCGA ||||||||||||||||||||| CAGCCAAGGATGACTTGCCGA |
| nta-miR169g | CAGCCAAGGATGACTTGCCGA ||||||||||||||||||||| CAGCCAAGGATGACTTGCCGA |
| nta-miR169h | CAGCCAAGGATGACTTGCCGA ||||||||||||||||||||| CAGCCAAGGATGACTTGCCGA |
| nta-miR169i | CAGCCAAGGATGACTTGCCGA ||||||||||||||||||||| CAGCCAAGGATGACTTGCCGA |
| nta-miR169j | CAGCCAAGGATGACTTGCCGA ||||||||||||||||||||| CAGCCAAGGATGACTTGCCGA |
| nta-miR169k | CAGCCAAGGATGACTTGCCGA ||||||||||||||||||||| CAGCCAAGGATGACTTGCCGA |
| nta-miR169l | CAGCCAAGGATGACTTGCCGA ||||||||||||||||||||| CAGCCAAGGATGACTTGCCGA |
| nta-miR169m | CAGCCAAGGATGACTTGCCGA ||||||||||||||||||||| CAGCCAAGGATGACTTGCCGA |
| nta-miR169o | CAGCCAAGGATGACTTGCCGA ||||||||||||||||||||| CAGCCAAGGATGACTTGCCGA |
| nta-miR169p | CAGCCAAGGATGACTTGCCGA ||||||||||||||||||||| CAGCCAAGGATGACTTGCCGA |
| osa-miR169a | CAGCCAAGGATGACTTGCCGA ||||||||||||||||||||| CAGCCAAGGATGACTTGCCGA |
| ptc-miR169a | CAGCCAAGGATGACTTGCCGA ||||||||||||||||||||| CAGCCAAGGATGACTTGCCGA |
| ptc-miR169b-5p | CAGCCAAGGATGACTTGCCGA ||||||||||||||||||||| CAGCCAAGGATGACTTGCCGA |
| ptc-miR169c | CAGCCAAGGATGACTTGCCGA ||||||||||||||||||||| CAGCCAAGGATGACTTGCCGA |
| sbi-miR169a | CAGCCAAGGATGACTTGCCGA ||||||||||||||||||||| CAGCCAAGGATGACTTGCCGA |
| sly-miR169c | CAGCCAAGGATGACTTGCCGA ||||||||||||||||||||| CAGCCAAGGATGACTTGCCGA |
| tcc-miR169a | CAGCCAAGGATGACTTGCCGA ||||||||||||||||||||| CAGCCAAGGATGACTTGCCGA |
| tcc-miR169c | CAGCCAAGGATGACTTGCCGA ||||||||||||||||||||| CAGCCAAGGATGACTTGCCGA |
| tcc-miR169e | CAGCCAAGGATGACTTGCCGA ||||||||||||||||||||| CAGCCAAGGATGACTTGCCGA |
| vvi-miR169f | CAGCCAAGGATGACTTGCCGA ||||||||||||||||||||| CAGCCAAGGATGACTTGCCGA |
| vvi-miR169g | CAGCCAAGGATGACTTGCCGA ||||||||||||||||||||| CAGCCAAGGATGACTTGCCGA |
| zma-miR169a-5p | CAGCCAAGGATGACTTGCCGA ||||||||||||||||||||| CAGCCAAGGATGACTTGCCGA |
| zma-miR169b-5p | CAGCCAAGGATGACTTGCCGA ||||||||||||||||||||| CAGCCAAGGATGACTTGCCGA |
Precursor of miRNA M00041
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch07 | 4210814 | 4210882 | + | CAGCCAAGGAUGACUUGCCG AGAUGUUGUAGCCUAAUGCA AUGACAUAUCGGCAGGUCAU CUUUGGCUA |
-45.20 | NA | structure |
| SL2.40ch01 | 41798673 | 41798534 | - | CAGCCAAGGAUGACUUGCCG ACUUUUGUAUUACUCUUCAU AUAUAUAUAUAUAUAUAUAU AUAUAUAUAUAUAUAUAUAU AUAUAUAUAUGGAAAUUACA UUAAACUUGGAAGAGAAAGU UGGCAAGUGGUCCUUGGCUA |
-68.70 | NA | structure |
