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Tomato miRNA M00045
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| AGAAUCUUGAUGAUGCUGCAG | 21 | miR172 | S06141815 | click here |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0739 | Solanum lycopersicum | Ailsa Craig | fruit, red ripe (52 days after anthesis) | 13 | 1.27 |
| S0738 | Solanum lycopersicum | Ailsa Craig | fruit, breaker (42 days after anthesis) | 13 | 1.72 |
| S0737 | Solanum lycopersicum | Ailsa Craig | fruit, mature green (39 days after anthesis) | 1 | 0.12 |
| S0735 | Solanum lycopersicum | Sunny | leaf , TSWV-infected | 4 | 0.3 |
| S0709 | Solanum lycopersicum | MicroTom | fruit , 1mm to 3mm in diameter | 11 | 6.24 |
| S0708 | Solanum lycopersicum | MicroTom | flower, open | 151 | 46.59 |
| S0707 | Solanum lycopersicum | MicroTom | flower bud, closed bud before flower blooming | 127 | 33.34 |
| S0373 | Solanum lycopersicum | Heinz 1706 | fruit | 4 | 1.2 |
| S0372 | Solanum lycopersicum | Heinz 1706 | flower | 1860 | 562.91 |
| S0371 | Solanum lycopersicum | Heinz 1706 | leaf | 2 | 0.6 |
Hits on known miRNAs
| hit miRNA | alignment |
|---|---|
| aly-miR172c-3p | AGAATCTTGATGATGCTGCAG ||||||||||||||||||||| AGAATCTTGATGATGCTGCAG |
| aly-miR172d-3p | AGAATCTTGATGATGCTGCAG ||||||||||||||||||||| AGAATCTTGATGATGCTGCAG |
| ath-miR172c | AGAATCTTGATGATGCTGCAG ||||||||||||||||||||| AGAATCTTGATGATGCTGCAG |
| ath-miR172d | AGAATCTTGATGATGCTGCAG ||||||||||||||||||||| AGAATCTTGATGATGCTGCAG |
| bna-miR172d | AGAATCTTGATGATGCTGCAG ||||||||||||||||||||| AGAATCTTGATGATGCTGCAG |
| cme-miR172e | AGAATCTTGATGATGCTGCAG ||||||||||||||||||||| AGAATCTTGATGATGCTGCAG |
| mdm-miR172m | AGAATCTTGATGATGCTGCAG ||||||||||||||||||||| AGAATCTTGATGATGCTGCAG |
| mdm-miR172n | AGAATCTTGATGATGCTGCAG ||||||||||||||||||||| AGAATCTTGATGATGCTGCAG |
| mdm-miR172o | AGAATCTTGATGATGCTGCAG ||||||||||||||||||||| AGAATCTTGATGATGCTGCAG |
| nta-miR172a | AGAATCTTGATGATGCTGCAG ||||||||||||||||||||| AGAATCTTGATGATGCTGCAG |
Precursor of miRNA M00045
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch04 | 4093937 | 4093791 | - | AUGCAGCAUCUUCAAGAUUC ACAUAGAUUUAUAUAAAAUA UAGAGUUCCAUGUUUGGGGU GAAAGUAAUUAAUUAAUUAA UUAAUUUUCUCCUAUAUAUU GGCUCUAUUGAUUAUUAUUU GUUGUGAGAAUCUUGAUGAU GCUGCAG |
-55.50 | NA | structure |
