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Tomato miRNA M00047
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| ACGAGAGUCAUCUGUGACAGG | 21 | miR1919 | S05091597 | NA |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0739 | Solanum lycopersicum | Ailsa Craig | fruit, red ripe (52 days after anthesis) | 5152 | 502.04 |
| S0738 | Solanum lycopersicum | Ailsa Craig | fruit, breaker (42 days after anthesis) | 2924 | 387.56 |
| S0737 | Solanum lycopersicum | Ailsa Craig | fruit, mature green (39 days after anthesis) | 179 | 20.91 |
| S0736 | Solanum lycopersicum | Ailsa Craig | fruit, immature (17 days after anthesis) | 159 | 34.24 |
| S0735 | Solanum lycopersicum | Sunny | leaf , TSWV-infected | 289 | 21.32 |
| S0734 | Solanum lycopersicum | IL8-3-1 | seedlings, two-week-old | 3 | 2.31 |
| S0731 | Solanum lycopersicum | IL8-2 | seedlings, two-week-old | 1 | 0.74 |
| S0728 | Solanum lycopersicum | IL8-1-1 | seedlings, two-week-old | 1 | 0.66 |
| S0727 | Solanum lycopersicum | IL2-5 | seedlings, two-week-old | 3 | 1.83 |
| S0724 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate2 | 2 | 1.17 |
| S0722 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F1) | seedlings, two-week-old , replicate2 | 3 | 2.12 |
| S0721 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F1) | seedlings, two-week-old , replicate1 | 3 | 3.27 |
| S0720 | Solanum pennellii | LA716 | seedlings, two-week-old , replicate2 | 1 | 0.96 |
| S0712 | Solanum lycopersicum | MicroTom | fruit , mature green | 3 | 0.77 |
| S0707 | Solanum lycopersicum | MicroTom | flower bud, closed bud before flower blooming | 1 | 0.26 |
| S0373 | Solanum lycopersicum | Heinz 1706 | fruit | 11 | 3.29 |
| S0372 | Solanum lycopersicum | Heinz 1706 | flower | 22 | 6.66 |
| S0371 | Solanum lycopersicum | Heinz 1706 | leaf | 26 | 7.83 |
Hits on known miRNAs
| hit miRNA | alignment |
|---|---|
| sly-miR1919a | ACGAGAGTCATCTGTGACAGG ||||||||||||||||||||| ACGAGAGTCATCTGTGACAGG |
| sly-miR1919b | ACGAGAGTCATCTGTGACAGG ||||||||||||||||||||| ACGAGAGTCATCTGTGACAGG |
| sly-miR1919c | ACGAGAGTCATCTGTGACAGG ||||||||||||||||||||| ACGAGAGTCATCTGTGACAGG |
Precursor of miRNA M00047
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch08 | 53821498 | 53821595 | + | CCUGUCGCAGAUGACUCUCG AUCUUGUCAUUAAGCCCCUU UCUCUAAGUCUAAUUAAUUU GAAUUCAAUGUGGUAGGACG AGAGUCAUCUGUGACAGG |
-44.90 | NA | structure |
| SL2.40ch08 | 53789927 | 53790015 | + | CCUGUCGCAGAUGACUUUCG CCCAUUUAUGGAACCACACU UUCUUUAAUUUGAAUUCUAU GUGGUAGGACGAGAGUCAUC UGUGACAGG |
-44.10 | miRNA* | structure |
| SL2.40ch08 | 53776409 | 53776497 | + | CCUGUCGCAGAUGACUUUCG CCCAUUUAUAGAACCACACU UUCUUUAAUUUGAAUUCUAU GUGGUAGGACGAGAGUCAUC UGUGACAGG |
-43.10 | miRNA* | structure |
| SL2.40ch12 | 6988970 | 6988872 | - | CCUGUCGCAGAUGACUUUCG CCCUUCUAAGGAACCACACU UUCUGUAAAUCUAAUUAAUU UGAAUUCAAUGUGGCAGGAC GAGAGUCAUCUGUGACAGG |
-43.14 | miRNA* | structure |
