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Tomato miRNA M00075
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| UGAAUCCUUCGGCUAUCCAUA | 21 | miR6027 | S23042498 | click here |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0739 | Solanum lycopersicum | Ailsa Craig | fruit, red ripe (52 days after anthesis) | 130 | 12.67 |
| S0738 | Solanum lycopersicum | Ailsa Craig | fruit, breaker (42 days after anthesis) | 68 | 9.01 |
| S0737 | Solanum lycopersicum | Ailsa Craig | fruit, mature green (39 days after anthesis) | 298 | 34.81 |
| S0736 | Solanum lycopersicum | Ailsa Craig | fruit, immature (17 days after anthesis) | 129 | 27.78 |
| S0735 | Solanum lycopersicum | Sunny | leaf , TSWV-infected | 5991 | 441.9 |
| S0716 | Solanum lycopersicum | MicroTom | fruit , 7 days post breaker | 23 | 9.62 |
| S0715 | Solanum lycopersicum | MicroTom | fruit , 5 days post breaker | 16 | 16.36 |
| S0714 | Solanum lycopersicum | MicroTom | fruit , 3 days post breaker | 171 | 43.04 |
| S0713 | Solanum lycopersicum | MicroTom | fruit , breaker stage | 44 | 12.47 |
| S0712 | Solanum lycopersicum | MicroTom | fruit , mature green | 202 | 51.68 |
| S0711 | Solanum lycopersicum | MicroTom | fruit , 11mm to 14mm in diameter | 222 | 106.94 |
| S0710 | Solanum lycopersicum | MicroTom | fruit , 5mm to 7mm in diameter | 66 | 54.83 |
| S0709 | Solanum lycopersicum | MicroTom | fruit , 1mm to 3mm in diameter | 240 | 136.08 |
| S0708 | Solanum lycopersicum | MicroTom | flower, open | 392 | 120.95 |
| S0707 | Solanum lycopersicum | MicroTom | flower bud, closed bud before flower blooming | 195 | 51.19 |
| S0373 | Solanum lycopersicum | Heinz 1706 | fruit | 482 | 144.27 |
| S0372 | Solanum lycopersicum | Heinz 1706 | flower | 244 | 73.84 |
| S0371 | Solanum lycopersicum | Heinz 1706 | leaf | 230 | 69.31 |
Hits on known miRNAs
| hit miRNA | alignment |
|---|---|
| sly-miR6027 | TGAATCCTTCGGCTATCCATA- |||||||||||||||||||||x TGAATCCTTCGGCTATCCATAA |
| stu-miR6027 | TGAATCCTTCGGCTATCCATA- |||||||||||||||||||||x TGAATCCTTCGGCTATCCATAA |
Precursor of miRNA M00075
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch10 | 62182532 | 62182654 | + | UAUGGGUAGCACAAGGAUUA AUGUGAAACAGAAAAGUGAU AUGCAAAGAAGAUGGAGAUU CAAUUGUUUAUUGUUACGAA GAAAACACUUUUGUGUUUCU CGUGAAUCCUUCGGCUAUCC AUA |
-43.50 | miRNA* | structure |
