 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
Tomato miRNA M00077
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| GUGCGAGGGGGCGACGCGA | 19 | NA | S19488162 | NA |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0739 | Solanum lycopersicum | Ailsa Craig | fruit, red ripe (52 days after anthesis) | 893 | 87.02 |
| S0738 | Solanum lycopersicum | Ailsa Craig | fruit, breaker (42 days after anthesis) | 388 | 51.43 |
| S0737 | Solanum lycopersicum | Ailsa Craig | fruit, mature green (39 days after anthesis) | 14 | 1.64 |
| S0736 | Solanum lycopersicum | Ailsa Craig | fruit, immature (17 days after anthesis) | 629 | 135.45 |
| S0735 | Solanum lycopersicum | Sunny | leaf , TSWV-infected | 14 | 1.03 |
| S0714 | Solanum lycopersicum | MicroTom | fruit , 3 days post breaker | 4 | 1.01 |
| S0712 | Solanum lycopersicum | MicroTom | fruit , mature green | 2 | 0.51 |
| S0711 | Solanum lycopersicum | MicroTom | fruit , 11mm to 14mm in diameter | 129 | 62.14 |
| S0710 | Solanum lycopersicum | MicroTom | fruit , 5mm to 7mm in diameter | 21 | 17.45 |
| S0709 | Solanum lycopersicum | MicroTom | fruit , 1mm to 3mm in diameter | 2 | 1.13 |
| S0707 | Solanum lycopersicum | MicroTom | flower bud, closed bud before flower blooming | 12 | 3.15 |
| S0373 | Solanum lycopersicum | Heinz 1706 | fruit | 22 | 6.58 |
| S0372 | Solanum lycopersicum | Heinz 1706 | flower | 4 | 1.21 |
| S0371 | Solanum lycopersicum | Heinz 1706 | leaf | 7 | 2.11 |
Hits on known miRNAs
| No hits on known miRNAs were found |
Precursor of miRNA M00077
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch01 | 59682567 | 59682781 | + | GUGCGAGGGGGCGACGCGAU GCGUGACGCACAGGCAGACG UGCCCUCGGCCAAUUGGCUU CAGGCGUAACUUGCGUUCAA AGACUCAAUGGUUCACGGGA UUCUGCAAUUCACACCAAGU AUCGCAUUUCGCUACGUUCU UCAUUGAUGCAAGAGCUGAG AUAUCCGUUAUCGAGAGUCG UUUGUGUUCACAGAGCAGCG CGCUUCCCCGCGCAC |
-75.50 | NA | structure |
