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Tomato miRNA M00078
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| UUGGCUGAGUGAGCAUCAC | 19 | NA | S25628346 | click here |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0739 | Solanum lycopersicum | Ailsa Craig | fruit, red ripe (52 days after anthesis) | 30 | 2.92 |
| S0738 | Solanum lycopersicum | Ailsa Craig | fruit, breaker (42 days after anthesis) | 9 | 1.19 |
| S0737 | Solanum lycopersicum | Ailsa Craig | fruit, mature green (39 days after anthesis) | 14 | 1.64 |
| S0736 | Solanum lycopersicum | Ailsa Craig | fruit, immature (17 days after anthesis) | 1 | 0.22 |
| S0735 | Solanum lycopersicum | Sunny | leaf , TSWV-infected | 57 | 4.2 |
| S0716 | Solanum lycopersicum | MicroTom | fruit , 7 days post breaker | 32 | 13.38 |
| S0715 | Solanum lycopersicum | MicroTom | fruit , 5 days post breaker | 7 | 7.16 |
| S0714 | Solanum lycopersicum | MicroTom | fruit , 3 days post breaker | 24 | 6.04 |
| S0713 | Solanum lycopersicum | MicroTom | fruit , breaker stage | 43 | 12.19 |
| S0712 | Solanum lycopersicum | MicroTom | fruit , mature green | 35 | 8.95 |
| S0711 | Solanum lycopersicum | MicroTom | fruit , 11mm to 14mm in diameter | 105 | 50.58 |
| S0710 | Solanum lycopersicum | MicroTom | fruit , 5mm to 7mm in diameter | 20 | 16.61 |
| S0709 | Solanum lycopersicum | MicroTom | fruit , 1mm to 3mm in diameter | 33 | 18.71 |
| S0708 | Solanum lycopersicum | MicroTom | flower, open | 4 | 1.23 |
| S0707 | Solanum lycopersicum | MicroTom | flower bud, closed bud before flower blooming | 45 | 11.81 |
| S0373 | Solanum lycopersicum | Heinz 1706 | fruit | 890 | 266.39 |
| S0372 | Solanum lycopersicum | Heinz 1706 | flower | 341 | 103.2 |
| S0371 | Solanum lycopersicum | Heinz 1706 | leaf | 899 | 270.91 |
Hits on known miRNAs
| No hits on known miRNAs were found |
Precursor of miRNA M00078
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch12 | 1977864 | 1977759 | - | CAGGUGCUCACUCAGCUAAU AGUUAUUAUUUAAGAAACUC AAUAAUAUUGGCAGCAAGGA GAAUGGUGACUUUCAGGAUG AUAACUAUUGGCUGAGUGAG CAUCAC |
-50.60 | miRNA* | structure |
| SL2.40ch12 | 1979509 | 1979404 | - | GAGGUGCUCACUCAGCUAAU AGUUAUUGUUUAAGAAACUC AAUAAUAUUGGCAGCAAGGA GAAUGGUGACUUUCAGGAUG AUAACUAUUGGCUGAGUGAG CAUCAC |
-49.70 | miRNA* | structure |
