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Tomato miRNA M00080
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| AGUGGACAAGUAAAAGUGAA | 20 | NA | S08481429 | click here |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0734 | Solanum lycopersicum | IL8-3-1 | seedlings, two-week-old | 1 | 0.77 |
| S0731 | Solanum lycopersicum | IL8-2 | seedlings, two-week-old | 1 | 0.74 |
| S0730 | Solanum lycopersicum | IL8-1-3 | seedlings, two-week-old | 1 | 0.62 |
| S0728 | Solanum lycopersicum | IL8-1-1 | seedlings, two-week-old | 3 | 1.98 |
| S0725 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate3 | 3 | 2.93 |
| S0724 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate2 | 4 | 2.34 |
| S0723 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate1 | 2 | 1.96 |
| S0722 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F1) | seedlings, two-week-old , replicate2 | 5 | 3.54 |
| S0721 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F1) | seedlings, two-week-old , replicate1 | 30 | 32.66 |
| S0720 | Solanum pennellii | LA716 | seedlings, two-week-old , replicate2 | 122 | 116.57 |
| S0718 | Solanum lycopersicum | M82 | seedlings, two-week-old , replicate2 | 7 | 4.88 |
| S0709 | Solanum lycopersicum | MicroTom | fruit , 1mm to 3mm in diameter | 1 | 0.57 |
Hits on known miRNAs
| No hits on known miRNAs were found |
Precursor of miRNA M00080
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch10 | 59638443 | 59638648 | + | UUCACUUUUACUUGUCGAAC AAUGGACUUUGCACACCACU UAAGGAUAAUAAAUGAAGUG AAUAUUUUAAUGGACUUGAG AAAUGAUUUGGAAUGAGUAG UUAAUGCUAAGGAUAAACCU AAAAAGAAAUUAUCUCUCUC UUUGAUAUGCUAAUGUGAAC UUGUUAAGUGAAUUUAUUUU UAGUAUAGUGGACAAGUAAA AGUGAA |
-46.20 | NA | structure |
