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Tomato miRNA M00084
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| AGGGAUUGUAGGCAGAGAGA | 20 | NA | S07846777 | click here |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0735 | Solanum lycopersicum | Sunny | leaf , TSWV-infected | 21 | 1.55 |
| S0734 | Solanum lycopersicum | IL8-3-1 | seedlings, two-week-old | 34 | 26.2 |
| S0733 | Solanum lycopersicum | IL8-3 | seedlings, two-week-old | 9 | 6.83 |
| S0732 | Solanum lycopersicum | IL8-2-1 | seedlings, two-week-old | 15 | 10.69 |
| S0731 | Solanum lycopersicum | IL8-2 | seedlings, two-week-old | 27 | 19.88 |
| S0730 | Solanum lycopersicum | IL8-1-3 | seedlings, two-week-old | 40 | 24.98 |
| S0729 | Solanum lycopersicum | IL8-1D | seedlings, two-week-old | 20 | 12.74 |
| S0728 | Solanum lycopersicum | IL8-1-1 | seedlings, two-week-old | 22 | 14.5 |
| S0727 | Solanum lycopersicum | IL2-5 | seedlings, two-week-old | 27 | 16.51 |
| S0726 | Solanum lycopersicum | IL1-1 | seedlings, two-week-old | 25 | 14.97 |
| S0725 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate3 | 6 | 5.85 |
| S0724 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate2 | 9 | 5.25 |
| S0723 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate1 | 8 | 7.85 |
| S0722 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F1) | seedlings, two-week-old , replicate2 | 13 | 9.19 |
| S0721 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F1) | seedlings, two-week-old , replicate1 | 14 | 15.24 |
| S0720 | Solanum pennellii | LA716 | seedlings, two-week-old , replicate2 | 8 | 7.64 |
| S0719 | Solanum pennellii | LA716 | seedlings, two-week-old , replicate1 | 5 | 14.44 |
| S0718 | Solanum lycopersicum | M82 | seedlings, two-week-old , replicate2 | 13 | 9.06 |
| S0717 | Solanum lycopersicum | M82 | seedlings, two-week-old , replicate1 | 7 | 9.34 |
| S0716 | Solanum lycopersicum | MicroTom | fruit , 7 days post breaker | 46 | 19.24 |
| S0715 | Solanum lycopersicum | MicroTom | fruit , 5 days post breaker | 2 | 2.05 |
| S0714 | Solanum lycopersicum | MicroTom | fruit , 3 days post breaker | 95 | 23.91 |
| S0713 | Solanum lycopersicum | MicroTom | fruit , breaker stage | 104 | 29.48 |
| S0712 | Solanum lycopersicum | MicroTom | fruit , mature green | 121 | 30.96 |
| S0711 | Solanum lycopersicum | MicroTom | fruit , 11mm to 14mm in diameter | 384 | 184.97 |
| S0710 | Solanum lycopersicum | MicroTom | fruit , 5mm to 7mm in diameter | 501 | 416.2 |
| S0709 | Solanum lycopersicum | MicroTom | fruit , 1mm to 3mm in diameter | 1073 | 608.39 |
| S0708 | Solanum lycopersicum | MicroTom | flower, open | 95 | 29.31 |
| S0707 | Solanum lycopersicum | MicroTom | flower bud, closed bud before flower blooming | 279 | 73.25 |
Hits on known miRNAs
| No hits on known miRNAs were found |
Precursor of miRNA M00084
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch02 | 45487032 | 45487195 | + | UCUUCCUGGCUAUAUUCCCU UGUAAAGUGUCCCUCUUCGC CGCAUUUGUAGCAUCCCGCU AUUCCUCCACCGCCUCCCUG GCUACAUUCCCUUGCGAAAG AAGGAGGGGGCUGCUACAAA UGUGGGGAAGAAGGGCAUUU UGGAAGGGAUUGUAGGCAGA GAGA |
-91.30 | NA | structure |
| SL2.40ch02 | 45483335 | 45483498 | + | UCUUCCUGGCUAUAUUCCCU UGUAAAGUGUCCUUCUUGUC CGCAUUUGUAGCAUCCCGCU CCUCCUCCACCGCCUCCUUG GCUACAUUCCCUUGUGAAAG AAGGAAGGGGCUGCUACAAA UGUGGGGAAGAAGGGCAUUU UGGAAGGGAUUGUAGGCAGA GAGA |
-91.80 | NA | structure |
