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Tomato miRNA M00088
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| UCACUGUGUGAGAUGGUAAUA | 21 | NA | S21973199 | click here |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0739 | Solanum lycopersicum | Ailsa Craig | fruit, red ripe (52 days after anthesis) | 5 | 0.49 |
| S0738 | Solanum lycopersicum | Ailsa Craig | fruit, breaker (42 days after anthesis) | 3 | 0.4 |
| S0737 | Solanum lycopersicum | Ailsa Craig | fruit, mature green (39 days after anthesis) | 15 | 1.75 |
| S0735 | Solanum lycopersicum | Sunny | leaf , TSWV-infected | 1592 | 117.43 |
| S0373 | Solanum lycopersicum | Heinz 1706 | fruit | 231 | 69.14 |
| S0372 | Solanum lycopersicum | Heinz 1706 | flower | 70 | 21.18 |
| S0371 | Solanum lycopersicum | Heinz 1706 | leaf | 282 | 84.98 |
Hits on known miRNAs
| No hits on known miRNAs were found |
Precursor of miRNA M00088
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch11 | 36953075 | 36952870 | - | UCACUGUGUGAGAUGGUAAU AACGGUGAUAAUGGUAUUCU AAUAUUGCUAAAGUUAGACA GAUUUACUGCCUUUUGUUAU UUCAGAUGCAGGAACACCAA UACAAGAAGCAAUGAGCUUG CUUGGGCAUGUCAAAAGCCG UAAAUCCAUUCAAUUUUAGC AAUAUUGGAAUACCAUCAUC ACCGUUAUUACCACCUGGCA CAGUGA |
-102.61 | miRNA* | structure |
