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Tomato miRNA M00090
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| CGUUGAAUAUAUCUCAUAAUG | 21 | NA | S14205483 | NA |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0739 | Solanum lycopersicum | Ailsa Craig | fruit, red ripe (52 days after anthesis) | 12 | 1.17 |
| S0738 | Solanum lycopersicum | Ailsa Craig | fruit, breaker (42 days after anthesis) | 25 | 3.31 |
| S0737 | Solanum lycopersicum | Ailsa Craig | fruit, mature green (39 days after anthesis) | 1113 | 130.02 |
| S0736 | Solanum lycopersicum | Ailsa Craig | fruit, immature (17 days after anthesis) | 10 | 2.15 |
| S0735 | Solanum lycopersicum | Sunny | leaf , TSWV-infected | 1 | 0.07 |
| S0373 | Solanum lycopersicum | Heinz 1706 | fruit | 3 | 0.9 |
Hits on known miRNAs
| No hits on known miRNAs were found |
Precursor of miRNA M00090
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch05 | 60646154 | 60646279 | + | CGUUGAAUAUAUCUCAUAAU GAAUGCAAUGUCAUAUACCA UCAACACUUGGAAACUCAAA UUGAGGUUAAAUCUCGGAGU GAUGAUGGUAUAUGACCUUG CAAUUCACUAUGAGAUAAGU UCAACG |
-63.10 | miRNA* | structure |
