Tomato miRNA M00091
| sequence | Length | miRNA family | sRNA ID | target |
|---|
| GAGGUGCUCACUCAGCUAAUA | 21 | NA |
S16533448 | NA |
Digital expression
| Sample | No. raw reads | RPM |
|---|
| ID | Organism | Cultivar | Tissue |
|---|
| S0739 |
Solanum lycopersicum |
Ailsa Craig |
fruit, red ripe (52 days after anthesis) |
17 |
1.66 |
| S0738 |
Solanum lycopersicum |
Ailsa Craig |
fruit, breaker (42 days after anthesis) |
148 |
19.62 |
| S0737 |
Solanum lycopersicum |
Ailsa Craig |
fruit, mature green (39 days after anthesis) |
1172 |
136.92 |
| S0736 |
Solanum lycopersicum |
Ailsa Craig |
fruit, immature (17 days after anthesis) |
5 |
1.08 |
| S0735 |
Solanum lycopersicum |
Sunny |
leaf , TSWV-infected |
109 |
8.04 |
| S0373 |
Solanum lycopersicum |
Heinz 1706 |
fruit |
1 |
0.3 |
| S0371 |
Solanum lycopersicum |
Heinz 1706 |
leaf |
1 |
0.3 |
Hits on known miRNAs
| No hits on known miRNAs were found | Precursor of miRNA M00091
| genome hit of precursor | precursor |
|---|
| sequence ID | start | end | strand |
sequence | folding
energy | miRNA* | structure |
|---|
| SL2.40ch12 |
1979509 |
1979404 |
- |
GAGGUGCUCACUCAGCUAAU
AGUUAUUGUUUAAGAAACUC
AAUAAUAUUGGCAGCAAGGA
GAAUGGUGACUUUCAGGAUG
AUAACUAUUGGCUGAGUGAG
CAUCAC |
-49.70 |
miRNA* |
structure |
|
