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Tomato miRNA M00093
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| AUAAUGCUUGGAAUAUGCCCU | 21 | NA | S09084492 | click here |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0739 | Solanum lycopersicum | Ailsa Craig | fruit, red ripe (52 days after anthesis) | 371 | 36.15 |
| S0738 | Solanum lycopersicum | Ailsa Craig | fruit, breaker (42 days after anthesis) | 122 | 16.17 |
| S0737 | Solanum lycopersicum | Ailsa Craig | fruit, mature green (39 days after anthesis) | 375 | 43.81 |
| S0736 | Solanum lycopersicum | Ailsa Craig | fruit, immature (17 days after anthesis) | 296 | 63.74 |
| S0735 | Solanum lycopersicum | Sunny | leaf , TSWV-infected | 1315 | 96.99 |
| S0715 | Solanum lycopersicum | MicroTom | fruit , 5 days post breaker | 1 | 1.02 |
| S0712 | Solanum lycopersicum | MicroTom | fruit , mature green | 3 | 0.77 |
| S0709 | Solanum lycopersicum | MicroTom | fruit , 1mm to 3mm in diameter | 3 | 1.7 |
| S0708 | Solanum lycopersicum | MicroTom | flower, open | 5 | 1.54 |
| S0707 | Solanum lycopersicum | MicroTom | flower bud, closed bud before flower blooming | 8 | 2.1 |
| S0373 | Solanum lycopersicum | Heinz 1706 | fruit | 575 | 172.11 |
| S0372 | Solanum lycopersicum | Heinz 1706 | flower | 241 | 72.94 |
| S0371 | Solanum lycopersicum | Heinz 1706 | leaf | 570 | 171.76 |
Hits on known miRNAs
| No hits on known miRNAs were found |
Precursor of miRNA M00093
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch05 | 60646110 | 60646323 | + | AGGGCAUAUGUCAAGUAUUA UGGGAAAUGUUAUUGUAAUU CACACGUUGAAUAUAUCUCA UAAUGAAUGCAAUGUCAUAU ACCAUCAACACUUGGAAACU CAAAUUGAGGUUAAAUCUCG GAGUGAUGAUGGUAUAUGAC CUUGCAAUUCACUAUGAGAU AAGUUCAACGUGUGAAUUGC CAUAAGAUCUCCCAUAAUGC UUGGAAUAUGCCCU |
-123.70 | NA | structure |
