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Tomato miRNA M00094
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| AACGGUGAUAAUGGUAUUCUA | 21 | NA | S01923165 | click here |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0739 | Solanum lycopersicum | Ailsa Craig | fruit, red ripe (52 days after anthesis) | 3 | 0.29 |
| S0738 | Solanum lycopersicum | Ailsa Craig | fruit, breaker (42 days after anthesis) | 7 | 0.93 |
| S0737 | Solanum lycopersicum | Ailsa Craig | fruit, mature green (39 days after anthesis) | 51 | 5.96 |
| S0736 | Solanum lycopersicum | Ailsa Craig | fruit, immature (17 days after anthesis) | 2 | 0.43 |
| S0735 | Solanum lycopersicum | Sunny | leaf , TSWV-infected | 322 | 23.75 |
| S0714 | Solanum lycopersicum | MicroTom | fruit , 3 days post breaker | 1 | 0.25 |
| S0712 | Solanum lycopersicum | MicroTom | fruit , mature green | 4 | 1.02 |
| S0708 | Solanum lycopersicum | MicroTom | flower, open | 1 | 0.31 |
| S0373 | Solanum lycopersicum | Heinz 1706 | fruit | 457 | 136.79 |
| S0372 | Solanum lycopersicum | Heinz 1706 | flower | 131 | 39.65 |
| S0371 | Solanum lycopersicum | Heinz 1706 | leaf | 641 | 193.16 |
Hits on known miRNAs
| No hits on known miRNAs were found |
Precursor of miRNA M00094
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch11 | 36953055 | 36952890 | - | AACGGUGAUAAUGGUAUUCU AAUAUUGCUAAAGUUAGACA GAUUUACUGCCUUUUGUUAU UUCAGAUGCAGGAACACCAA UACAAGAAGCAAUGAGCUUG CUUGGGCAUGUCAAAAGCCG UAAAUCCAUUCAAUUUUAGC AAUAUUGGAAUACCAUCAUC ACCGUU |
-71.31 | miRNA* | structure |
