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Tomato miRNA M00099
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| UGAUGUACAUGGGAUGGAUUA | 21 | NA | S23390315 | NA |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0739 | Solanum lycopersicum | Ailsa Craig | fruit, red ripe (52 days after anthesis) | 1 | 0.1 |
| S0738 | Solanum lycopersicum | Ailsa Craig | fruit, breaker (42 days after anthesis) | 1 | 0.13 |
| S0737 | Solanum lycopersicum | Ailsa Craig | fruit, mature green (39 days after anthesis) | 2 | 0.23 |
| S0736 | Solanum lycopersicum | Ailsa Craig | fruit, immature (17 days after anthesis) | 1 | 0.22 |
| S0735 | Solanum lycopersicum | Sunny | leaf , TSWV-infected | 652 | 48.09 |
| S0714 | Solanum lycopersicum | MicroTom | fruit , 3 days post breaker | 2 | 0.5 |
| S0712 | Solanum lycopersicum | MicroTom | fruit , mature green | 1 | 0.26 |
| S0708 | Solanum lycopersicum | MicroTom | flower, open | 32 | 9.87 |
| S0707 | Solanum lycopersicum | MicroTom | flower bud, closed bud before flower blooming | 12 | 3.15 |
| S0373 | Solanum lycopersicum | Heinz 1706 | fruit | 5 | 1.5 |
| S0372 | Solanum lycopersicum | Heinz 1706 | flower | 200 | 60.53 |
| S0371 | Solanum lycopersicum | Heinz 1706 | leaf | 779 | 234.75 |
Hits on known miRNAs
| No hits on known miRNAs were found |
Precursor of miRNA M00099
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch01 | 3821657 | 3821778 | + | UGAUGUACAUGGGAUGGAUU ACAACUUGAUUAGAAAACAU UGGACACAAUACUUCAAAAC UUCCCAAAAACGGUCUUAUG GAAUGCGAGUAGAGAUUGUU GUACUUUCUCUCCCUGAUGU CA |
-22.90 | NA | structure |
