 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
Tomato miRNA M00101
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| CGGUUCAAUAAAGCUGUGGGA | 21 | NA | S14134810 | NA |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0739 | Solanum lycopersicum | Ailsa Craig | fruit, red ripe (52 days after anthesis) | 24 | 2.34 |
| S0738 | Solanum lycopersicum | Ailsa Craig | fruit, breaker (42 days after anthesis) | 9 | 1.19 |
| S0737 | Solanum lycopersicum | Ailsa Craig | fruit, mature green (39 days after anthesis) | 18 | 2.1 |
| S0736 | Solanum lycopersicum | Ailsa Craig | fruit, immature (17 days after anthesis) | 4 | 0.86 |
| S0734 | Solanum lycopersicum | IL8-3-1 | seedlings, two-week-old | 16 | 12.33 |
| S0733 | Solanum lycopersicum | IL8-3 | seedlings, two-week-old | 20 | 15.17 |
| S0732 | Solanum lycopersicum | IL8-2-1 | seedlings, two-week-old | 7 | 4.99 |
| S0731 | Solanum lycopersicum | IL8-2 | seedlings, two-week-old | 7 | 5.16 |
| S0730 | Solanum lycopersicum | IL8-1-3 | seedlings, two-week-old | 31 | 19.36 |
| S0729 | Solanum lycopersicum | IL8-1D | seedlings, two-week-old | 17 | 10.83 |
| S0728 | Solanum lycopersicum | IL8-1-1 | seedlings, two-week-old | 38 | 25.04 |
| S0727 | Solanum lycopersicum | IL2-5 | seedlings, two-week-old | 9 | 5.5 |
| S0726 | Solanum lycopersicum | IL1-1 | seedlings, two-week-old | 6 | 3.59 |
| S0725 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate3 | 46 | 44.88 |
| S0724 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate2 | 39 | 22.77 |
| S0723 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate1 | 76 | 74.55 |
| S0722 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F1) | seedlings, two-week-old , replicate2 | 52 | 36.78 |
| S0721 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F1) | seedlings, two-week-old , replicate1 | 171 | 186.15 |
| S0720 | Solanum pennellii | LA716 | seedlings, two-week-old , replicate2 | 309 | 295.24 |
| S0719 | Solanum pennellii | LA716 | seedlings, two-week-old , replicate1 | 38 | 109.77 |
| S0718 | Solanum lycopersicum | M82 | seedlings, two-week-old , replicate2 | 6 | 4.18 |
| S0717 | Solanum lycopersicum | M82 | seedlings, two-week-old , replicate1 | 1 | 1.33 |
| S0714 | Solanum lycopersicum | MicroTom | fruit , 3 days post breaker | 12 | 3.02 |
| S0712 | Solanum lycopersicum | MicroTom | fruit , mature green | 7 | 1.79 |
| S0711 | Solanum lycopersicum | MicroTom | fruit , 11mm to 14mm in diameter | 3 | 1.45 |
| S0708 | Solanum lycopersicum | MicroTom | flower, open | 2 | 0.62 |
| S0371 | Solanum lycopersicum | Heinz 1706 | leaf | 1 | 0.3 |
Hits on known miRNAs
| No hits on known miRNAs were found |
Precursor of miRNA M00101
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch00 | 12537520 | 12537617 | + | UUCCACAGCUUUCUUGAACU GCAUCUACAAUUUCAAUUCA UUAUUGAAAAAGAAAAAAUU GAUUCAUAUUGUUGUUGCGG UUCAAUAAAGCUGUGGGA |
-40.30 | miRNA* | structure |
| SL2.40ch12 | 2905790 | 2905661 | - | UUCCACAGCUUUCUUGAACU GCAUACAUAUAACAAAAAAA UCUGAUUUUUUUUUGAUUUU UUUUUACUUUUAUAAAGAAA AAAUUUAGAUGGAAAGAAUU AAAUUGUUGCGGUUCAAUAA AGCUGUGGGA |
-42.20 | miRNA* | structure |
