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Tomato miRNA M00106
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| UUCACUGUGUGAGAUGGUAAU | 21 | NA | S24968120 | click here |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0739 | Solanum lycopersicum | Ailsa Craig | fruit, red ripe (52 days after anthesis) | 21 | 2.05 |
| S0738 | Solanum lycopersicum | Ailsa Craig | fruit, breaker (42 days after anthesis) | 3 | 0.4 |
| S0737 | Solanum lycopersicum | Ailsa Craig | fruit, mature green (39 days after anthesis) | 18 | 2.1 |
| S0735 | Solanum lycopersicum | Sunny | leaf , TSWV-infected | 3860 | 284.71 |
| S0716 | Solanum lycopersicum | MicroTom | fruit , 7 days post breaker | 1 | 0.42 |
| S0714 | Solanum lycopersicum | MicroTom | fruit , 3 days post breaker | 1 | 0.25 |
| S0712 | Solanum lycopersicum | MicroTom | fruit , mature green | 6 | 1.54 |
| S0711 | Solanum lycopersicum | MicroTom | fruit , 11mm to 14mm in diameter | 2 | 0.96 |
| S0709 | Solanum lycopersicum | MicroTom | fruit , 1mm to 3mm in diameter | 1 | 0.57 |
| S0708 | Solanum lycopersicum | MicroTom | flower, open | 1 | 0.31 |
| S0707 | Solanum lycopersicum | MicroTom | flower bud, closed bud before flower blooming | 2 | 0.53 |
| S0373 | Solanum lycopersicum | Heinz 1706 | fruit | 872 | 261 |
| S0372 | Solanum lycopersicum | Heinz 1706 | flower | 316 | 95.63 |
| S0371 | Solanum lycopersicum | Heinz 1706 | leaf | 1369 | 412.54 |
Hits on known miRNAs
| No hits on known miRNAs were found |
Precursor of miRNA M00106
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch11 | 36953076 | 36952869 | - | UUCACUGUGUGAGAUGGUAA UAACGGUGAUAAUGGUAUUC UAAUAUUGCUAAAGUUAGAC AGAUUUACUGCCUUUUGUUA UUUCAGAUGCAGGAACACCA AUACAAGAAGCAAUGAGCUU GCUUGGGCAUGUCAAAAGCC GUAAAUCCAUUCAAUUUUAG CAAUAUUGGAAUACCAUCAU CACCGUUAUUACCACCUGGC ACAGUGAA |
-103.61 | miRNA* | structure |
