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Tomato miRNA M00107
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| AGGAAACUGUUUAGUCCAACC | 21 | NA | S07357562 | click here |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0735 | Solanum lycopersicum | Sunny | leaf , TSWV-infected | 2 | 0.15 |
| S0708 | Solanum lycopersicum | MicroTom | flower, open | 1 | 0.31 |
| S0373 | Solanum lycopersicum | Heinz 1706 | fruit | 1 | 0.3 |
| S0372 | Solanum lycopersicum | Heinz 1706 | flower | 1431 | 433.08 |
| S0371 | Solanum lycopersicum | Heinz 1706 | leaf | 1 | 0.3 |
Hits on known miRNAs
| No hits on known miRNAs were found |
Precursor of miRNA M00107
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch03 | 61794559 | 61794734 | + | AGGAAACUGUUUAGUCCAAC CCAAGGUGGGGUAUUGGAAC UGAUCUUUGCUGCUGAAUCA UUGGCUCAUGAGCAUGUCAA AGAAGAUGAUUGAACAUUCU GGACAUGUUCUUGCUCCAAU GAUGCAGGAGCUGAGCUCGG UUUUUCACCGCCUUUUCUUG GACUGAAGGGUUUCCU |
-84.80 | NA | structure |
