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Tomato miRNA M00108
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| UGUGAGAUGGUAAUAACGGUG | 21 | NA | S24082662 | click here |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0739 | Solanum lycopersicum | Ailsa Craig | fruit, red ripe (52 days after anthesis) | 30 | 2.92 |
| S0738 | Solanum lycopersicum | Ailsa Craig | fruit, breaker (42 days after anthesis) | 71 | 9.41 |
| S0737 | Solanum lycopersicum | Ailsa Craig | fruit, mature green (39 days after anthesis) | 72 | 8.41 |
| S0736 | Solanum lycopersicum | Ailsa Craig | fruit, immature (17 days after anthesis) | 6 | 1.29 |
| S0735 | Solanum lycopersicum | Sunny | leaf , TSWV-infected | 880 | 64.91 |
| S0716 | Solanum lycopersicum | MicroTom | fruit , 7 days post breaker | 107 | 44.74 |
| S0715 | Solanum lycopersicum | MicroTom | fruit , 5 days post breaker | 23 | 23.52 |
| S0714 | Solanum lycopersicum | MicroTom | fruit , 3 days post breaker | 146 | 36.75 |
| S0713 | Solanum lycopersicum | MicroTom | fruit , breaker stage | 44 | 12.47 |
| S0712 | Solanum lycopersicum | MicroTom | fruit , mature green | 114 | 29.17 |
| S0709 | Solanum lycopersicum | MicroTom | fruit , 1mm to 3mm in diameter | 3 | 1.7 |
| S0708 | Solanum lycopersicum | MicroTom | flower, open | 116 | 35.79 |
| S0707 | Solanum lycopersicum | MicroTom | flower bud, closed bud before flower blooming | 32 | 8.4 |
| S0373 | Solanum lycopersicum | Heinz 1706 | fruit | 355 | 106.26 |
| S0372 | Solanum lycopersicum | Heinz 1706 | flower | 130 | 39.34 |
| S0371 | Solanum lycopersicum | Heinz 1706 | leaf | 1528 | 460.45 |
Hits on known miRNAs
| No hits on known miRNAs were found |
Precursor of miRNA M00108
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch11 | 36953069 | 36952876 | - | UGUGAGAUGGUAAUAACGGU GAUAAUGGUAUUCUAAUAUU GCUAAAGUUAGACAGAUUUA CUGCCUUUUGUUAUUUCAGA UGCAGGAACACCAAUACAAG AAGCAAUGAGCUUGCUUGGG CAUGUCAAAAGCCGUAAAUC CAUUCAAUUUUAGCAAUAUU GGAAUACCAUCAUCACCGUU AUUACCACCUGGCA |
-89.61 | miRNA* | structure |
