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Tomato miRNA M00109
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| UUUUCAGUAGACGUUGUGAAU | 21 | NA | S26599310 | click here |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0739 | Solanum lycopersicum | Ailsa Craig | fruit, red ripe (52 days after anthesis) | 17 | 1.66 |
| S0738 | Solanum lycopersicum | Ailsa Craig | fruit, breaker (42 days after anthesis) | 15 | 1.99 |
| S0737 | Solanum lycopersicum | Ailsa Craig | fruit, mature green (39 days after anthesis) | 3 | 0.35 |
| S0735 | Solanum lycopersicum | Sunny | leaf , TSWV-infected | 11443 | 844.03 |
| S0716 | Solanum lycopersicum | MicroTom | fruit , 7 days post breaker | 9 | 3.76 |
| S0714 | Solanum lycopersicum | MicroTom | fruit , 3 days post breaker | 5 | 1.26 |
| S0373 | Solanum lycopersicum | Heinz 1706 | fruit | 154 | 46.09 |
| S0372 | Solanum lycopersicum | Heinz 1706 | flower | 12 | 3.63 |
| S0371 | Solanum lycopersicum | Heinz 1706 | leaf | 31 | 9.34 |
Hits on known miRNAs
| No hits on known miRNAs were found |
Precursor of miRNA M00109
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch08 | 56132648 | 56132786 | + | UUUUCAGUAGACGUUGUGAA UAAUUGAUAAAUACAGGUAU ACAGAGGUCUUAAUAUAGUC AGAACCUAGAAAUAUGUGUA ACUAGAUUCAGACCUUUGUA CACUUGUAUUCUGUUGCUAU UCACAAUCUCUGCUGAAAA |
-58.20 | NA | structure |
