Tomato Functional Genomics Database (TFGD)

sequence	Length	miRNA family	sRNA ID	target
UUUCAGUAGACGUUGUGAAUA	21	NA	S26131005	click here

Sample				No. raw reads	RPM
ID	Organism	Cultivar	Tissue	No. raw reads	RPM
S0739	Solanum lycopersicum	Ailsa Craig	fruit, red ripe (52 days after anthesis)	113	11.01
S0738	Solanum lycopersicum	Ailsa Craig	fruit, breaker (42 days after anthesis)	77	10.21
S0737	Solanum lycopersicum	Ailsa Craig	fruit, mature green (39 days after anthesis)	61	7.13
S0736	Solanum lycopersicum	Ailsa Craig	fruit, immature (17 days after anthesis)	23	4.95
S0735	Solanum lycopersicum	Sunny	leaf , TSWV-infected	42748	3153.09
S0716	Solanum lycopersicum	MicroTom	fruit , 7 days post breaker	4	1.67
S0715	Solanum lycopersicum	MicroTom	fruit , 5 days post breaker	1	1.02
S0714	Solanum lycopersicum	MicroTom	fruit , 3 days post breaker	13	3.27
S0713	Solanum lycopersicum	MicroTom	fruit , breaker stage	6	1.7
S0712	Solanum lycopersicum	MicroTom	fruit , mature green	5	1.28
S0709	Solanum lycopersicum	MicroTom	fruit , 1mm to 3mm in diameter	1	0.57
S0708	Solanum lycopersicum	MicroTom	flower, open	4	1.23
S0373	Solanum lycopersicum	Heinz 1706	fruit	1259	376.84
S0372	Solanum lycopersicum	Heinz 1706	flower	111	33.59
S0371	Solanum lycopersicum	Heinz 1706	leaf	172	51.83

No hits on known miRNAs were found

genome hit of precursor				precursor
sequence ID	start	end	strand	sequence	folding energy	miRNA*	structure
SL2.40ch08	56132649	56132785	+	UUUCAGUAGACGUUGUGAAU AAUUGAUAAAUACAGGUAUA CAGAGGUCUUAAUAUAGUCA GAACCUAGAAAUAUGUGUAA CUAGAUUCAGACCUUUGUAC ACUUGUAUUCUGUUGCUAUU CACAAUCUCUGCUGAAA	-57.30	NA	structure