Tomato Functional Genomics Database (TFGD)

sequence	Length	miRNA family	sRNA ID	target
UGAACCUGCAUCGUGAUGGCCU	22	NA	S22951927	NA

Sample				No. raw reads	RPM
ID	Organism	Cultivar	Tissue	No. raw reads	RPM
S0739	Solanum lycopersicum	Ailsa Craig	fruit, red ripe (52 days after anthesis)	8	0.78
S0738	Solanum lycopersicum	Ailsa Craig	fruit, breaker (42 days after anthesis)	6	0.8
S0737	Solanum lycopersicum	Ailsa Craig	fruit, mature green (39 days after anthesis)	7	0.82
S0735	Solanum lycopersicum	Sunny	leaf , TSWV-infected	1478	109.02
S0716	Solanum lycopersicum	MicroTom	fruit , 7 days post breaker	78	32.62
S0715	Solanum lycopersicum	MicroTom	fruit , 5 days post breaker	12	12.27
S0714	Solanum lycopersicum	MicroTom	fruit , 3 days post breaker	147	37
S0713	Solanum lycopersicum	MicroTom	fruit , breaker stage	104	29.48
S0712	Solanum lycopersicum	MicroTom	fruit , mature green	220	56.28
S0711	Solanum lycopersicum	MicroTom	fruit , 11mm to 14mm in diameter	43	20.71
S0710	Solanum lycopersicum	MicroTom	fruit , 5mm to 7mm in diameter	45	37.38
S0709	Solanum lycopersicum	MicroTom	fruit , 1mm to 3mm in diameter	67	37.99
S0708	Solanum lycopersicum	MicroTom	flower, open	272	83.92
S0707	Solanum lycopersicum	MicroTom	flower bud, closed bud before flower blooming	226	59.33
S0373	Solanum lycopersicum	Heinz 1706	fruit	275	82.31
S0372	Solanum lycopersicum	Heinz 1706	flower	203	61.44
S0371	Solanum lycopersicum	Heinz 1706	leaf	327	98.54

No hits on known miRNAs were found

genome hit of precursor				precursor
sequence ID	start	end	strand	sequence	folding energy	miRNA*	structure
SL2.40ch03	61427691	61427824	+	UGAACCUGCAUCGUGAUGGC CUGUGCCAUCUGGGUUAGAG AUGCUCUCACCUCAAAUCAG AAUAAUAAGUCCACAUCAAC CAUAUUAAGGGCAUCUCUAG CCCAGAUGGCACAUGCCAUC ACGAUGUAGGCUCA	-83.00	NA	structure