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Tomato miRNA M00119
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| AGUGGACUAGAAAAUGUGCAUU | 22 | NA | S08484636 | click here |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0735 | Solanum lycopersicum | Sunny | leaf , TSWV-infected | 1 | 0.07 |
| S0708 | Solanum lycopersicum | MicroTom | flower, open | 26 | 8.02 |
| S0707 | Solanum lycopersicum | MicroTom | flower bud, closed bud before flower blooming | 5 | 1.31 |
| S0372 | Solanum lycopersicum | Heinz 1706 | flower | 396 | 119.85 |
Hits on known miRNAs
| No hits on known miRNAs were found |
Precursor of miRNA M00119
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch01 | 5447185 | 5447052 | - | UUUGCUAUUUUCUAUUUCAU UCAGAUAUUGCAUGAUGGGC CAUUAUGUUGAUGCACCAGU GGAUUGGUGUUGUGAAGAAU GUGAUAUUGAUAAAUGGAUA AUGUUUCAAUUGAGUGGACU AGAAAAUGUGCAUU |
-38.10 | NA | structure |
