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Tomato miRNA M00121
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| AUUUUUUGGCAUAGUUUUGAAC | 22 | NA | S12437043 | click here |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0716 | Solanum lycopersicum | MicroTom | fruit , 7 days post breaker | 3 | 1.25 |
| S0709 | Solanum lycopersicum | MicroTom | fruit , 1mm to 3mm in diameter | 6 | 3.4 |
| S0708 | Solanum lycopersicum | MicroTom | flower, open | 467 | 144.09 |
| S0707 | Solanum lycopersicum | MicroTom | flower bud, closed bud before flower blooming | 120 | 31.5 |
| S0372 | Solanum lycopersicum | Heinz 1706 | flower | 8 | 2.42 |
Hits on known miRNAs
| No hits on known miRNAs were found |
Precursor of miRNA M00121
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch05 | 2985931 | 2985847 | - | AUUUUUUGGCAUAGUUUUGA ACUGUGAUAAGAAACUGAAG CCAAGGCUGGAUAUUUUGGC AUAGUUUUGAACUGUGGUAA GAAAC |
-29.30 | NA | structure |
| SL2.40ch05 | 2986031 | 2985947 | - | AUUUUUUGGCAUAGUUUUGA ACUGUGGUAAGAAACUGAAG CCGAGGCUGGAUUUUUUGGC AUAAUUUUGAACUGUGGUAA GAAAC |
-27.60 | NA | structure |
| SL2.40ch05 | 2985968 | 2985810 | - | AUUUUGAACUGUGGUAAGAA ACUGAAGCCGAGGCUGGAUU UUUUGGCAUAGUUUUGAACU GUGAUAAGAAACUGAAGCCA AGGCUGGAUAUUUUGGCAUA GUUUUGAACUGUGGUAAGAA ACUGAAGCCAAGGCUAGAUU UUUUGGCAUAGUUUUGAAC |
-58.40 | NA | structure |
