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Tomato miRNA M00125
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| UUCACUGUGUGAGAUGGUAAUA | 22 | NA | S24968121 | click here |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0739 | Solanum lycopersicum | Ailsa Craig | fruit, red ripe (52 days after anthesis) | 14 | 1.36 |
| S0738 | Solanum lycopersicum | Ailsa Craig | fruit, breaker (42 days after anthesis) | 3 | 0.4 |
| S0737 | Solanum lycopersicum | Ailsa Craig | fruit, mature green (39 days after anthesis) | 30 | 3.5 |
| S0735 | Solanum lycopersicum | Sunny | leaf , TSWV-infected | 1876 | 138.37 |
| S0708 | Solanum lycopersicum | MicroTom | flower, open | 6 | 1.85 |
| S0373 | Solanum lycopersicum | Heinz 1706 | fruit | 583 | 174.5 |
| S0372 | Solanum lycopersicum | Heinz 1706 | flower | 238 | 72.03 |
| S0371 | Solanum lycopersicum | Heinz 1706 | leaf | 624 | 188.04 |
Hits on known miRNAs
| No hits on known miRNAs were found |
Precursor of miRNA M00125
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch11 | 36953076 | 36952869 | - | UUCACUGUGUGAGAUGGUAA UAACGGUGAUAAUGGUAUUC UAAUAUUGCUAAAGUUAGAC AGAUUUACUGCCUUUUGUUA UUUCAGAUGCAGGAACACCA AUACAAGAAGCAAUGAGCUU GCUUGGGCAUGUCAAAAGCC GUAAAUCCAUUCAAUUUUAG CAAUAUUGGAAUACCAUCAU CACCGUUAUUACCACCUGGC ACAGUGAA |
-103.61 | miRNA* | structure |
