Tomato miRNA M00130
| sequence | Length | miRNA family | sRNA ID | target |
|---|
| CCGACUGAGAAUUGCAAAGGUA | 22 | NA |
S13622368 | NA |
Digital expression
| Sample | No. raw reads | RPM |
|---|
| ID | Organism | Cultivar | Tissue |
|---|
| S0739 |
Solanum lycopersicum |
Ailsa Craig |
fruit, red ripe (52 days after anthesis) |
5 |
0.49 |
| S0738 |
Solanum lycopersicum |
Ailsa Craig |
fruit, breaker (42 days after anthesis) |
5 |
0.66 |
| S0737 |
Solanum lycopersicum |
Ailsa Craig |
fruit, mature green (39 days after anthesis) |
63 |
7.36 |
| S0736 |
Solanum lycopersicum |
Ailsa Craig |
fruit, immature (17 days after anthesis) |
9 |
1.94 |
| S0735 |
Solanum lycopersicum |
Sunny |
leaf , TSWV-infected |
4085 |
301.31 |
| S0716 |
Solanum lycopersicum |
MicroTom |
fruit , 7 days post breaker |
2 |
0.84 |
| S0373 |
Solanum lycopersicum |
Heinz 1706 |
fruit |
113 |
33.82 |
| S0372 |
Solanum lycopersicum |
Heinz 1706 |
flower |
103 |
31.17 |
| S0371 |
Solanum lycopersicum |
Heinz 1706 |
leaf |
182 |
54.84 |
Hits on known miRNAs
| No hits on known miRNAs were found | Precursor of miRNA M00130
| genome hit of precursor | precursor |
|---|
| sequence ID | start | end | strand |
sequence | folding
energy | miRNA* | structure |
|---|
| SL2.40ch06 |
32482743 |
32482852 |
+ |
CCGACUGAGAAUUGCAAAGG
UAAAGUGAAAGCGACUAAUG
CUAAGGAGGAAGUUUUGCAC
AUAACCUUAGCAUUAGUCGC
UUUCACUUUUCCUUUGCAAU
UCUCAGUCGG |
-77.47 |
miRNA* |
structure |
|
