Tomato Functional Genomics Database (TFGD)

sequence	Length	miRNA family	sRNA ID	target
UGGUAUAUGACCUUGCAAUUCA	22	NA	S23872007	click here

Sample				No. raw reads	RPM
ID	Organism	Cultivar	Tissue	No. raw reads	RPM
S0739	Solanum lycopersicum	Ailsa Craig	fruit, red ripe (52 days after anthesis)	736	71.72
S0738	Solanum lycopersicum	Ailsa Craig	fruit, breaker (42 days after anthesis)	2573	341.04
S0737	Solanum lycopersicum	Ailsa Craig	fruit, mature green (39 days after anthesis)	249	29.09
S0736	Solanum lycopersicum	Ailsa Craig	fruit, immature (17 days after anthesis)	35	7.54
S0735	Solanum lycopersicum	Sunny	leaf , TSWV-infected	244	18
S0716	Solanum lycopersicum	MicroTom	fruit , 7 days post breaker	1	0.42
S0714	Solanum lycopersicum	MicroTom	fruit , 3 days post breaker	1	0.25
S0713	Solanum lycopersicum	MicroTom	fruit , breaker stage	5	1.42
S0712	Solanum lycopersicum	MicroTom	fruit , mature green	15	3.84
S0708	Solanum lycopersicum	MicroTom	flower, open	33	10.18
S0707	Solanum lycopersicum	MicroTom	flower bud, closed bud before flower blooming	11	2.89
S0373	Solanum lycopersicum	Heinz 1706	fruit	149	44.6
S0372	Solanum lycopersicum	Heinz 1706	flower	35	10.59
S0371	Solanum lycopersicum	Heinz 1706	leaf	86	25.92

No hits on known miRNAs were found

genome hit of precursor				precursor
sequence ID	start	end	strand	sequence	folding energy	miRNA*	structure
SL2.40ch05	60646173	60646260	+	UGAAUGCAAUGUCAUAUACC AUCAACACUUGGAAACUCAA AUUGAGGUUAAAUCUCGGAG UGAUGAUGGUAUAUGACCUU GCAAUUCA	-40.00	NA	structure