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Tomato miRNA M00132
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| UUUUCAGUAGACGUUGUGAAUA | 22 | NA | S26599311 | NA |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0739 | Solanum lycopersicum | Ailsa Craig | fruit, red ripe (52 days after anthesis) | 5 | 0.49 |
| S0738 | Solanum lycopersicum | Ailsa Craig | fruit, breaker (42 days after anthesis) | 4 | 0.53 |
| S0737 | Solanum lycopersicum | Ailsa Craig | fruit, mature green (39 days after anthesis) | 2 | 0.23 |
| S0736 | Solanum lycopersicum | Ailsa Craig | fruit, immature (17 days after anthesis) | 3 | 0.65 |
| S0735 | Solanum lycopersicum | Sunny | leaf , TSWV-infected | 4953 | 365.33 |
| S0716 | Solanum lycopersicum | MicroTom | fruit , 7 days post breaker | 1 | 0.42 |
| S0712 | Solanum lycopersicum | MicroTom | fruit , mature green | 2 | 0.51 |
| S0709 | Solanum lycopersicum | MicroTom | fruit , 1mm to 3mm in diameter | 2 | 1.13 |
| S0708 | Solanum lycopersicum | MicroTom | flower, open | 1 | 0.31 |
| S0373 | Solanum lycopersicum | Heinz 1706 | fruit | 78 | 23.35 |
| S0372 | Solanum lycopersicum | Heinz 1706 | flower | 9 | 2.72 |
| S0371 | Solanum lycopersicum | Heinz 1706 | leaf | 23 | 6.93 |
Hits on known miRNAs
| No hits on known miRNAs were found |
Precursor of miRNA M00132
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch08 | 56132648 | 56132786 | + | UUUUCAGUAGACGUUGUGAA UAAUUGAUAAAUACAGGUAU ACAGAGGUCUUAAUAUAGUC AGAACCUAGAAAUAUGUGUA ACUAGAUUCAGACCUUUGUA CACUUGUAUUCUGUUGCUAU UCACAAUCUCUGCUGAAAA |
-58.20 | NA | structure |
