 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
Tomato miRNA M00153
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| UUGAAUGUUGGGGAACGAACGUCU | 24 | NA | S25335887 | NA |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0739 | Solanum lycopersicum | Ailsa Craig | fruit, red ripe (52 days after anthesis) | 55 | 5.36 |
| S0738 | Solanum lycopersicum | Ailsa Craig | fruit, breaker (42 days after anthesis) | 36 | 4.77 |
| S0737 | Solanum lycopersicum | Ailsa Craig | fruit, mature green (39 days after anthesis) | 864 | 100.93 |
| S0736 | Solanum lycopersicum | Ailsa Craig | fruit, immature (17 days after anthesis) | 120 | 25.84 |
| S0735 | Solanum lycopersicum | Sunny | leaf , TSWV-infected | 65 | 4.79 |
| S0716 | Solanum lycopersicum | MicroTom | fruit , 7 days post breaker | 13 | 5.44 |
| S0715 | Solanum lycopersicum | MicroTom | fruit , 5 days post breaker | 2 | 2.05 |
| S0714 | Solanum lycopersicum | MicroTom | fruit , 3 days post breaker | 21 | 5.29 |
| S0713 | Solanum lycopersicum | MicroTom | fruit , breaker stage | 32 | 9.07 |
| S0712 | Solanum lycopersicum | MicroTom | fruit , mature green | 19 | 4.86 |
| S0711 | Solanum lycopersicum | MicroTom | fruit , 11mm to 14mm in diameter | 11 | 5.3 |
| S0710 | Solanum lycopersicum | MicroTom | fruit , 5mm to 7mm in diameter | 14 | 11.63 |
| S0709 | Solanum lycopersicum | MicroTom | fruit , 1mm to 3mm in diameter | 10 | 5.67 |
| S0708 | Solanum lycopersicum | MicroTom | flower, open | 21 | 6.48 |
| S0707 | Solanum lycopersicum | MicroTom | flower bud, closed bud before flower blooming | 44 | 11.55 |
| S0373 | Solanum lycopersicum | Heinz 1706 | fruit | 68 | 20.35 |
| S0372 | Solanum lycopersicum | Heinz 1706 | flower | 28 | 8.47 |
| S0371 | Solanum lycopersicum | Heinz 1706 | leaf | 15 | 4.52 |
Hits on known miRNAs
| No hits on known miRNAs were found |
Precursor of miRNA M00153
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch09 | 3057927 | 3057788 | - | UUGAAUGUUGGGGAACGAAC GUCUAAGGUUUGGGUCAACG AUCUCAAUGUUGAUGCGUCC GCUUGUUGUUGAUGCUGCUC CAAAAGGUUCAACAUUGGGA UUUUAGCCCAAACAUCAGAC GUCCCUUCCCCAUCGUUCAA |
-67.10 | NA | structure |
