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Tomato miRNA M00157
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| CAUGGCAGAGACAAUACCUGAAUA | 24 | NA | S13318084 | NA |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0735 | Solanum lycopersicum | Sunny | leaf , TSWV-infected | 21 | 1.55 |
| S0734 | Solanum lycopersicum | IL8-3-1 | seedlings, two-week-old | 19 | 14.64 |
| S0733 | Solanum lycopersicum | IL8-3 | seedlings, two-week-old | 36 | 27.31 |
| S0732 | Solanum lycopersicum | IL8-2-1 | seedlings, two-week-old | 23 | 16.39 |
| S0731 | Solanum lycopersicum | IL8-2 | seedlings, two-week-old | 40 | 29.46 |
| S0730 | Solanum lycopersicum | IL8-1-3 | seedlings, two-week-old | 48 | 29.97 |
| S0729 | Solanum lycopersicum | IL8-1D | seedlings, two-week-old | 17 | 10.83 |
| S0728 | Solanum lycopersicum | IL8-1-1 | seedlings, two-week-old | 33 | 21.75 |
| S0727 | Solanum lycopersicum | IL2-5 | seedlings, two-week-old | 42 | 25.68 |
| S0726 | Solanum lycopersicum | IL1-1 | seedlings, two-week-old | 32 | 19.16 |
| S0725 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate3 | 76 | 74.15 |
| S0724 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate2 | 57 | 33.28 |
| S0723 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate1 | 114 | 111.83 |
| S0722 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F1) | seedlings, two-week-old , replicate2 | 78 | 55.16 |
| S0721 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F1) | seedlings, two-week-old , replicate1 | 35 | 38.1 |
| S0720 | Solanum pennellii | LA716 | seedlings, two-week-old , replicate2 | 83 | 79.3 |
| S0719 | Solanum pennellii | LA716 | seedlings, two-week-old , replicate1 | 36 | 103.99 |
| S0718 | Solanum lycopersicum | M82 | seedlings, two-week-old , replicate2 | 10 | 6.97 |
| S0717 | Solanum lycopersicum | M82 | seedlings, two-week-old , replicate1 | 12 | 16.01 |
| S0716 | Solanum lycopersicum | MicroTom | fruit , 7 days post breaker | 4 | 1.67 |
| S0714 | Solanum lycopersicum | MicroTom | fruit , 3 days post breaker | 10 | 2.52 |
| S0713 | Solanum lycopersicum | MicroTom | fruit , breaker stage | 7 | 1.98 |
| S0712 | Solanum lycopersicum | MicroTom | fruit , mature green | 15 | 3.84 |
| S0711 | Solanum lycopersicum | MicroTom | fruit , 11mm to 14mm in diameter | 3 | 1.45 |
| S0710 | Solanum lycopersicum | MicroTom | fruit , 5mm to 7mm in diameter | 11 | 9.14 |
| S0709 | Solanum lycopersicum | MicroTom | fruit , 1mm to 3mm in diameter | 7 | 3.97 |
| S0708 | Solanum lycopersicum | MicroTom | flower, open | 36 | 11.11 |
| S0707 | Solanum lycopersicum | MicroTom | flower bud, closed bud before flower blooming | 31 | 8.14 |
| S0373 | Solanum lycopersicum | Heinz 1706 | fruit | 3 | 0.9 |
| S0372 | Solanum lycopersicum | Heinz 1706 | flower | 5 | 1.51 |
| S0371 | Solanum lycopersicum | Heinz 1706 | leaf | 2 | 0.6 |
Hits on known miRNAs
| No hits on known miRNAs were found |
Precursor of miRNA M00157
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch10 | 64094132 | 64094355 | + | UAUUCAGGUAUAGUCUCUGC CAUGGGCGGCCAUUCGCUCU UUUAAUCCCCUCUUAUUGGC AUGCAGCCUCAAGGGAGAAU CGAACCCGUGACCUAUGGCU CCUUUACAUCCCUCCCAAGG AGAUCGCCUUUCACCAAUUA AGCUGCAGCUCCUUGAGGCU GCAUGCCAAUAAGAGGGGAU UAAAAGAGCGAAUGGCCGCC CAUGGCAGAGACAAUACCUG AAUA |
-161.20 | NA | structure |
