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Tomato miRNA M00164
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| AGAGACACACUUAUACUAUACUCA | 24 | NA | S06436844 | click here |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0738 | Solanum lycopersicum | Ailsa Craig | fruit, breaker (42 days after anthesis) | 1 | 0.13 |
| S0735 | Solanum lycopersicum | Sunny | leaf , TSWV-infected | 1 | 0.07 |
| S0734 | Solanum lycopersicum | IL8-3-1 | seedlings, two-week-old | 5 | 3.85 |
| S0733 | Solanum lycopersicum | IL8-3 | seedlings, two-week-old | 2 | 1.52 |
| S0732 | Solanum lycopersicum | IL8-2-1 | seedlings, two-week-old | 6 | 4.27 |
| S0731 | Solanum lycopersicum | IL8-2 | seedlings, two-week-old | 2 | 1.47 |
| S0730 | Solanum lycopersicum | IL8-1-3 | seedlings, two-week-old | 6 | 3.75 |
| S0729 | Solanum lycopersicum | IL8-1D | seedlings, two-week-old | 3 | 1.91 |
| S0726 | Solanum lycopersicum | IL1-1 | seedlings, two-week-old | 1 | 0.6 |
| S0725 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate3 | 8 | 7.81 |
| S0724 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate2 | 15 | 8.76 |
| S0723 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate1 | 13 | 12.75 |
| S0722 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F1) | seedlings, two-week-old , replicate2 | 9 | 6.37 |
| S0721 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F1) | seedlings, two-week-old , replicate1 | 5 | 5.44 |
| S0720 | Solanum pennellii | LA716 | seedlings, two-week-old , replicate2 | 15 | 14.33 |
| S0719 | Solanum pennellii | LA716 | seedlings, two-week-old , replicate1 | 47 | 135.77 |
| S0718 | Solanum lycopersicum | M82 | seedlings, two-week-old , replicate2 | 2 | 1.39 |
| S0717 | Solanum lycopersicum | M82 | seedlings, two-week-old , replicate1 | 53 | 70.73 |
| S0709 | Solanum lycopersicum | MicroTom | fruit , 1mm to 3mm in diameter | 1 | 0.57 |
| S0708 | Solanum lycopersicum | MicroTom | flower, open | 3 | 0.93 |
| S0372 | Solanum lycopersicum | Heinz 1706 | flower | 1 | 0.3 |
Hits on known miRNAs
| No hits on known miRNAs were found |
Precursor of miRNA M00164
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch04 | 41805940 | 41806162 | + | AGAGACACACUUAUACUAUA CUCAGGUCCUAUUACCCUCC UGAACUUAUUUUAUUAAUAA UUUUUUACCCCCUUUUAGCU UACGUGGCACUAUCUUGUGG GCCCAACGAUGGUUGACUUU UUUUUUCGAACUAGUGCCAC GUAGGCUAAAAAGGGGUAGA AAAUUACAUAUAAAAUAAGU UCAGGGAGGUAAUAGGACCU UAGUAUAGUAUAAGUGUGUC UCU |
-139.30 | miRNA* | structure |
| SL2.40ch09 | 57288679 | 57288458 | - | AGAGACACACUUAUACUAUA CUCAGGUCCUAUUACCUCCC UGAACUUAUUUUAUAUAUAA UUUUCUAUCCCUUUUCGGCU UACGUGACACUAUCUUGUGG GCCCAGUGUGUGUUGACAUU UCUUUUCAAGCUAGUGCCAC GUAGGCCAAAAAGGGGUAAA AAUUAUUUAUAAAAUGAGUU CAGGUGGGUAAUAGGACCUU AGUAUAGUAUAAUUGUGUCU CU |
-129.70 | NA | structure |
| SL2.40ch01 | 66632210 | 66631990 | - | AGAGACACACUUAUACUAUA CUCAGGUCCUAUUACCCCCC UGAACUUAUUCUAUAAAUAA UUUUCUAUCCCUUUCGUCCU ACGUGACACUAGCUUGAAGA AAAAUGUCAACAUACGUUGG GCCUACAAGAUAGUGUCAUG UAGGCCGAAAAGUGGUAGAA AAAUAGUUAUACAAUAAGUU UAGGGGGUAAUAGGACCUUA AUAUAAUAUAAGUGUGUCUU U |
-113.50 | NA | structure |
