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Tomato miRNA M00168
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| ACGUCCCUUCCCCAUCGUUCAACA | 24 | NA | S05260615 | NA |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0739 | Solanum lycopersicum | Ailsa Craig | fruit, red ripe (52 days after anthesis) | 25 | 2.44 |
| S0738 | Solanum lycopersicum | Ailsa Craig | fruit, breaker (42 days after anthesis) | 31 | 4.11 |
| S0737 | Solanum lycopersicum | Ailsa Craig | fruit, mature green (39 days after anthesis) | 57 | 6.66 |
| S0736 | Solanum lycopersicum | Ailsa Craig | fruit, immature (17 days after anthesis) | 739 | 159.14 |
| S0735 | Solanum lycopersicum | Sunny | leaf , TSWV-infected | 831 | 61.29 |
| S0714 | Solanum lycopersicum | MicroTom | fruit , 3 days post breaker | 1 | 0.25 |
| S0709 | Solanum lycopersicum | MicroTom | fruit , 1mm to 3mm in diameter | 6 | 3.4 |
| S0708 | Solanum lycopersicum | MicroTom | flower, open | 1 | 0.31 |
| S0707 | Solanum lycopersicum | MicroTom | flower bud, closed bud before flower blooming | 1 | 0.26 |
| S0373 | Solanum lycopersicum | Heinz 1706 | fruit | 8 | 2.39 |
| S0372 | Solanum lycopersicum | Heinz 1706 | flower | 8 | 2.42 |
| S0371 | Solanum lycopersicum | Heinz 1706 | leaf | 3 | 0.9 |
Hits on known miRNAs
| No hits on known miRNAs were found |
Precursor of miRNA M00168
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch09 | 3057929 | 3057786 | - | UGUUGAAUGUUGGGGAACGA ACGUCUAAGGUUUGGGUCAA CGAUCUCAAUGUUGAUGCGU CCGCUUGUUGUUGAUGCUGC UCCAAAAGGUUCAACAUUGG GAUUUUAGCCCAAACAUCAG ACGUCCCUUCCCCAUCGUUC AACA |
-71.40 | NA | structure |
