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Tomato miRNA M00172
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| UUUAAUUGAAUGCCAAGUGUGUGG | 24 | NA | S25924204 | NA |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0739 | Solanum lycopersicum | Ailsa Craig | fruit, red ripe (52 days after anthesis) | 119 | 11.6 |
| S0738 | Solanum lycopersicum | Ailsa Craig | fruit, breaker (42 days after anthesis) | 39 | 5.17 |
| S0737 | Solanum lycopersicum | Ailsa Craig | fruit, mature green (39 days after anthesis) | 215 | 25.12 |
| S0736 | Solanum lycopersicum | Ailsa Craig | fruit, immature (17 days after anthesis) | 818 | 176.15 |
| S0735 | Solanum lycopersicum | Sunny | leaf , TSWV-infected | 2 | 0.15 |
| S0373 | Solanum lycopersicum | Heinz 1706 | fruit | 5 | 1.5 |
| S0371 | Solanum lycopersicum | Heinz 1706 | leaf | 2 | 0.6 |
Hits on known miRNAs
| No hits on known miRNAs were found |
Precursor of miRNA M00172
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch12 | 46793875 | 46794014 | + | CUACACACUCUGCAUUCAAU UAAAUUAUGUAAAUCACCGU UAUGUUUCUCUUAAUUGCUG AAUUAAUCUAUGAUUCAACU UACUUAAGAGAAAAAACUAA UGUAUACUUAUACUAAUUUA AUUGAAUGCCAAGUGUGUGG |
-49.40 | miRNA* | structure |
