Tomato miRNA M00179
| sequence | Length | miRNA family | sRNA ID | target |
|---|
| UUGGCAUAAGUUUGUGAAAGCCGG | 24 | NA |
S25617520 | NA |
Digital expression
| Sample | No. raw reads | RPM |
|---|
| ID | Organism | Cultivar | Tissue |
|---|
| S0739 |
Solanum lycopersicum |
Ailsa Craig |
fruit, red ripe (52 days after anthesis) |
82 |
7.99 |
| S0738 |
Solanum lycopersicum |
Ailsa Craig |
fruit, breaker (42 days after anthesis) |
79 |
10.47 |
| S0737 |
Solanum lycopersicum |
Ailsa Craig |
fruit, mature green (39 days after anthesis) |
73 |
8.53 |
| S0736 |
Solanum lycopersicum |
Ailsa Craig |
fruit, immature (17 days after anthesis) |
3 |
0.65 |
| S0735 |
Solanum lycopersicum |
Sunny |
leaf , TSWV-infected |
181 |
13.35 |
| S0713 |
Solanum lycopersicum |
MicroTom |
fruit , breaker stage |
3 |
0.85 |
| S0708 |
Solanum lycopersicum |
MicroTom |
flower, open |
2 |
0.62 |
| S0707 |
Solanum lycopersicum |
MicroTom |
flower bud, closed bud before flower blooming |
5 |
1.31 |
| S0373 |
Solanum lycopersicum |
Heinz 1706 |
fruit |
695 |
208.02 |
| S0372 |
Solanum lycopersicum |
Heinz 1706 |
flower |
188 |
56.9 |
| S0371 |
Solanum lycopersicum |
Heinz 1706 |
leaf |
71 |
21.4 |
Hits on known miRNAs
| No hits on known miRNAs were found | Precursor of miRNA M00179
| genome hit of precursor | precursor |
|---|
| sequence ID | start | end | strand |
sequence | folding
energy | miRNA* | structure |
|---|
| SL2.40ch08 |
3341867 |
3341760 |
- |
UUGGCAUAAGUUUGUGAAAG
CCGGAGAUUUAGGAGUAAAG
UACAAUUAUUUUCGCAAAUA
AUUGUAUCUUUUGCUCUUAA
ACCUUUAGCUUUAACAAAUU
UGUGCCAA |
-52.00 |
NA |
structure |
|
