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Tomato miRNA M00184
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| GAUAGUACAGGUAGGAAACUCACA | 24 | NA | S16766588 | NA |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0739 | Solanum lycopersicum | Ailsa Craig | fruit, red ripe (52 days after anthesis) | 19 | 1.85 |
| S0738 | Solanum lycopersicum | Ailsa Craig | fruit, breaker (42 days after anthesis) | 22 | 2.92 |
| S0737 | Solanum lycopersicum | Ailsa Craig | fruit, mature green (39 days after anthesis) | 105 | 12.27 |
| S0736 | Solanum lycopersicum | Ailsa Craig | fruit, immature (17 days after anthesis) | 25 | 5.38 |
| S0735 | Solanum lycopersicum | Sunny | leaf , TSWV-infected | 408 | 30.09 |
| S0716 | Solanum lycopersicum | MicroTom | fruit , 7 days post breaker | 2 | 0.84 |
| S0710 | Solanum lycopersicum | MicroTom | fruit , 5mm to 7mm in diameter | 2 | 1.66 |
| S0709 | Solanum lycopersicum | MicroTom | fruit , 1mm to 3mm in diameter | 3 | 1.7 |
| S0708 | Solanum lycopersicum | MicroTom | flower, open | 5 | 1.54 |
| S0707 | Solanum lycopersicum | MicroTom | flower bud, closed bud before flower blooming | 10 | 2.63 |
| S0373 | Solanum lycopersicum | Heinz 1706 | fruit | 261 | 78.12 |
| S0372 | Solanum lycopersicum | Heinz 1706 | flower | 881 | 266.63 |
| S0371 | Solanum lycopersicum | Heinz 1706 | leaf | 257 | 77.44 |
Hits on known miRNAs
| No hits on known miRNAs were found |
Precursor of miRNA M00184
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch04 | 1580247 | 1580113 | - | UGUGAGUUUUCUGUCUGUAC UAGUAUCAAAUGCUUCGCGA AGCAAACCUGAUUGUUCAGG UAGGAAAAGUGAACAACUUG UAGUUCAUUUGUGUUUCCGU AAACAUUUGGUGAUAGUACA GGUAGGAAACUCACA |
-63.40 | NA | structure |
