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Tomato miRNA M00007

sequenceLengthmiRNA familysRNA IDtarget
UGACAGAAGAGAGUGAGCAC20miR156 S23094735click here

Digital expression

SampleNo. raw readsRPM
IDOrganismCultivarTissue
S0739 Solanum lycopersicum Ailsa Craig fruit, red ripe (52 days after anthesis) 34 3.31
S0738 Solanum lycopersicum Ailsa Craig fruit, breaker (42 days after anthesis) 30 3.98
S0737 Solanum lycopersicum Ailsa Craig fruit, mature green (39 days after anthesis) 5 0.58
S0736 Solanum lycopersicum Ailsa Craig fruit, immature (17 days after anthesis) 3 0.65
S0735 Solanum lycopersicum Sunny leaf , TSWV-infected 12803 944.35
S0734 Solanum lycopersicum IL8-3-1 seedlings, two-week-old 4236 3264.32
S0733 Solanum lycopersicum IL8-3 seedlings, two-week-old 4286 3251.39
S0732 Solanum lycopersicum IL8-2-1 seedlings, two-week-old 4226 3010.76
S0731 Solanum lycopersicum IL8-2 seedlings, two-week-old 4185 3082.16
S0730 Solanum lycopersicum IL8-1-3 seedlings, two-week-old 4407 2751.76
S0729 Solanum lycopersicum IL8-1D seedlings, two-week-old 2314 1474.12
S0728 Solanum lycopersicum IL8-1-1 seedlings, two-week-old 4186 2758.78
S0727 Solanum lycopersicum IL2-5 seedlings, two-week-old 5937 3629.57
S0726 Solanum lycopersicum IL1-1 seedlings, two-week-old 4218 2524.95
S0725 Solanum lycopersicum x S. pennellii M82 x LA716 (F2) seedlings, two-week-old , replicate3 14810 14450.1
S0724 Solanum lycopersicum x S. pennellii M82 x LA716 (F2) seedlings, two-week-old , replicate2 2691 1570.93
S0723 Solanum lycopersicum x S. pennellii M82 x LA716 (F2) seedlings, two-week-old , replicate1 2918 2862.37
S0722 Solanum lycopersicum x S. pennellii M82 x LA716 (F1) seedlings, two-week-old , replicate2 1618 1144.3
S0721 Solanum lycopersicum x S. pennellii M82 x LA716 (F1) seedlings, two-week-old , replicate1 18737 20397.1
S0720 Solanum pennellii LA716 seedlings, two-week-old , replicate2 9935 9492.46
S0719 Solanum pennellii LA716 seedlings, two-week-old , replicate1 40417 116754
S0718 Solanum lycopersicum M82 seedlings, two-week-old , replicate2 5453 3798.78
S0717 Solanum lycopersicum M82 seedlings, two-week-old , replicate1 6514 8692.51
S0716 Solanum lycopersicum MicroTom fruit , 7 days post breaker 1622 678.26
S0715 Solanum lycopersicum MicroTom fruit , 5 days post breaker 216 220.87
S0714 Solanum lycopersicum MicroTom fruit , 3 days post breaker 5169 1301.06
S0713 Solanum lycopersicum MicroTom fruit , breaker stage 174 49.32
S0712 Solanum lycopersicum MicroTom fruit , mature green 1409 360.48
S0711 Solanum lycopersicum MicroTom fruit , 11mm to 14mm in diameter 232 111.75
S0710 Solanum lycopersicum MicroTom fruit , 5mm to 7mm in diameter 54 44.86
S0709 Solanum lycopersicum MicroTom fruit , 1mm to 3mm in diameter 33 18.71
S0708 Solanum lycopersicum MicroTom flower, open 195 60.17
S0707 Solanum lycopersicum MicroTom flower bud, closed bud before flower blooming 750 196.9
S0373 Solanum lycopersicum Heinz 1706 fruit 601 179.89
S0372 Solanum lycopersicum Heinz 1706 flower 3008 910.35
S0371 Solanum lycopersicum Heinz 1706 leaf 8276 2493.9

Hits on known miRNAs

hit miRNAalignment
aly-miR156a-5pTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
aly-miR156b-5pTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
aly-miR156c-5pTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
aly-miR156d-5pTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
aly-miR156e-5pTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
aly-miR156f-5pTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
ath-miR156aTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
ath-miR156bTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
ath-miR156cTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
ath-miR156dTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
ath-miR156eTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
ath-miR156fTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
bdi-miR156bTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
bdi-miR156cTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
bdi-miR156dTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
bna-miR156aTGACAGAAGAGAGTGAGCAC-
||||||||||||||||||||x
TGACAGAAGAGAGTGAGCACA
bna-miR156dTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
bna-miR156eTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
bna-miR156fTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
cca-miR156aTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
cme-miR156aTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
cme-miR156cTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
cme-miR156dTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
cme-miR156iTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
cme-miR156j--TGACAGAAGAGAGTGAGCAC
xx||||||||||||||||||||
GTTGACAGAAGAGAGTGAGCAC
csi-miR156TGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
ctr-miR156TGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
dpr-miR156bTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
ghr-miR156aTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
ghr-miR156bTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
ghr-miR156dTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
gma-miR156aTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
gma-miR156hTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
gma-miR156k-TGACAGAAGAGAGTGAGCAC
x||||||||||||||||||||
TTGACAGAAGAGAGTGAGCAC
gma-miR156n-TGACAGAAGAGAGTGAGCAC
x||||||||||||||||||||
TTGACAGAAGAGAGTGAGCAC
gma-miR156o-TGACAGAAGAGAGTGAGCAC
x||||||||||||||||||||
TTGACAGAAGAGAGTGAGCAC
gma-miR156qTGACAGAAGAGAGTGAGCAC-
||||||||||||||||||||x
TGACAGAAGAGAGTGAGCACT
gma-miR156sTGACAGAAGAGAGTGAGCAC-
||||||||||||||||||||x
TGACAGAAGAGAGTGAGCACT
gma-miR156uTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
gma-miR156vTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
gma-miR156wTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
gma-miR156xTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
gma-miR156yTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
han-miR156aTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
han-miR156bTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
har-miR156aTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
htu-miR156aTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
hvu-miR156TGACAGAAGAGAGTGAGCAC-
||||||||||||||||||||x
TGACAGAAGAGAGTGAGCACA
mdm-miR156aTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
mdm-miR156bTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
mdm-miR156cTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
mdm-miR156dTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
mdm-miR156eTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
mdm-miR156fTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
mdm-miR156gTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
mdm-miR156hTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
mdm-miR156iTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
mdm-miR156jTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
mdm-miR156kTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
mdm-miR156lTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
mdm-miR156mTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
mdm-miR156nTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
mdm-miR156oTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
mtr-miR156bTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
mtr-miR156cTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
mtr-miR156dTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
mtr-miR156iTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
nta-miR156aTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
nta-miR156bTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
nta-miR156cTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
nta-miR156dTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
nta-miR156eTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
osa-miR156aTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
osa-miR156b-5pTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
osa-miR156c-5pTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
osa-miR156dTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
osa-miR156eTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
osa-miR156f-5pTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
osa-miR156g-5pTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
osa-miR156h-5pTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
osa-miR156iTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
osa-miR156j-5pTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
ppt-miR156aTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
ppt-miR156bTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
ppt-miR156cTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
ptc-miR156aTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
ptc-miR156bTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
ptc-miR156cTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
ptc-miR156dTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
ptc-miR156eTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
ptc-miR156fTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
rco-miR156aTGACAGAAGAGAGTGAGCAC-
||||||||||||||||||||x
TGACAGAAGAGAGTGAGCACA
rco-miR156bTGACAGAAGAGAGTGAGCAC-
||||||||||||||||||||x
TGACAGAAGAGAGTGAGCACA
rco-miR156cTGACAGAAGAGAGTGAGCAC-
||||||||||||||||||||x
TGACAGAAGAGAGTGAGCACA
rco-miR156dTGACAGAAGAGAGTGAGCAC-
||||||||||||||||||||x
TGACAGAAGAGAGTGAGCACA
sbi-miR156aTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
sbi-miR156bTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
sbi-miR156cTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
sbi-miR156fTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
sbi-miR156gTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
sbi-miR156hTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
sbi-miR156iTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
sof-miR156TGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
ssl-miR156TGACAGAAGAGAGTGAGCAC-
||||||||||||||||||||x
TGACAGAAGAGAGTGAGCACA
ssp-miR156TGACAGAAGAGAGTGAGCAC-
||||||||||||||||||||x
TGACAGAAGAGAGTGAGCACA
tae-miR156TGACAGAAGAGAGTGAGCAC-
||||||||||||||||||||x
TGACAGAAGAGAGTGAGCACA
tcc-miR156bTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
tcc-miR156cTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
tcc-miR156dTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
tcc-miR156gTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
vun-miR156aTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
vvi-miR156bTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
vvi-miR156cTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
vvi-miR156dTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
zma-miR156a-5pTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
zma-miR156b-5pTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
zma-miR156cTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
zma-miR156d-5pTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
zma-miR156e-5pTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
zma-miR156f-5pTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
zma-miR156g-5pTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
zma-miR156h-5pTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
zma-miR156i-5pTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC
zma-miR156l-5pTGACAGAAGAGAGTGAGCAC
||||||||||||||||||||
TGACAGAAGAGAGTGAGCAC

Precursor of miRNA M00007

genome hit of precursorprecursor
sequence IDstartendstrand sequencefolding
energy
miRNA*structure
SL2.40ch07 324087 324172 + UGACAGAAGAGAGUGAGCAC
ACGAUGUCAAAUUGUAUAAA
UAUAUAUACAAUUGUCAUUU
GCGUGUGCUCACUUCUCAUU
CUGUCA
-44.80 NA structure
SL2.40ch08 49276200 49276286 + UGACAGAAGAGAGUGAGCAC
ACAUGGUGUUUUCUAGCAUG
AUGUUUUACAUGCUUGAAAC
UAUGUGUGCUCACUGCUCUA
UCUGUCA
-50.90 NA structure
SL2.40ch07 48503782 48503866 + UGACAGAAGAGAGUGAGCAC
ACAUGGUUCUUUCAUGGAUU
AUUCCCCAUGUUUAAAAGCU
CUGCGUGCUCACGCUCUAUC
UGUCA
-40.90 NA structure
SL2.40ch08 49143878 49143793 - UGACAGAAGAGAGUGAGCAC
AUAUGGUCUUUUCAAGCAUG
AUGUUUACAUGCUUGAAGCU
AUGCGUGCUCACUUCUCUAU
CUGUCA
-48.50 NA structure
SL2.40ch08 49143814 49143604 - GUGCUCACUUCUCUAUCUGU
CACCCCCCAAUCCCCAACUG
CUUUCUCUUUGUCUGUUUAU
AUUUUUUUUUGUUUAUUUAU
GAUGUUUGAUCAUAUUAAUU
GGAUUAAUUCAUAAGCUUAU
GCUAAGACUUUGACUUCACU
UGUCUUUAUUUUUGGGUCAA
GCAUUGAGUGGGAUGUAAAA
CCAAAGGGAGGUGACAGAAG
AGAGUGAGCAC
-67.20 NA structure
SL2.40ch08 49143139 49143054 - UGACAGAAGAGAGUGAGCAC
ACAUGAUGUUUUCUCGCAUG
AUGUUUACAUGCUUGAAACU
AUGCGUGCUCACUGCUCUAU
CUGUCA
-41.30 NA structure
SL2.40ch08 49122968 49122875 - UGACAGAAGAGAGUGAGCAC
ACAUGGCGUUUUCUGGCAUG
AUGUUUAUAUAUAUAUAUGC
UUGAAACUAUGUGUGCUCAC
UGCUCUAUCUGUCA
-49.90 NA structure