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Tomato miRNA M00019
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| UUUGGAUUGAAGGGAGCUCUA | 21 | miR159 | S26397462 | click here |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0739 | Solanum lycopersicum | Ailsa Craig | fruit, red ripe (52 days after anthesis) | 6735 | 656.29 |
| S0738 | Solanum lycopersicum | Ailsa Craig | fruit, breaker (42 days after anthesis) | 3502 | 464.17 |
| S0737 | Solanum lycopersicum | Ailsa Craig | fruit, mature green (39 days after anthesis) | 32314 | 3774.99 |
| S0736 | Solanum lycopersicum | Ailsa Craig | fruit, immature (17 days after anthesis) | 18011 | 3878.54 |
| S0735 | Solanum lycopersicum | Sunny | leaf , TSWV-infected | 1160 | 85.56 |
| S0716 | Solanum lycopersicum | MicroTom | fruit , 7 days post breaker | 302 | 126.29 |
| S0715 | Solanum lycopersicum | MicroTom | fruit , 5 days post breaker | 206 | 210.65 |
| S0714 | Solanum lycopersicum | MicroTom | fruit , 3 days post breaker | 1249 | 314.38 |
| S0713 | Solanum lycopersicum | MicroTom | fruit , breaker stage | 353 | 100.05 |
| S0712 | Solanum lycopersicum | MicroTom | fruit , mature green | 545 | 139.43 |
| S0711 | Solanum lycopersicum | MicroTom | fruit , 11mm to 14mm in diameter | 3507 | 1689.32 |
| S0710 | Solanum lycopersicum | MicroTom | fruit , 5mm to 7mm in diameter | 2634 | 2188.17 |
| S0709 | Solanum lycopersicum | MicroTom | fruit , 1mm to 3mm in diameter | 4679 | 2653.01 |
| S0708 | Solanum lycopersicum | MicroTom | flower, open | 781 | 240.97 |
| S0707 | Solanum lycopersicum | MicroTom | flower bud, closed bud before flower blooming | 1988 | 521.9 |
| S0373 | Solanum lycopersicum | Heinz 1706 | fruit | 1013 | 303.21 |
| S0372 | Solanum lycopersicum | Heinz 1706 | flower | 467 | 141.33 |
| S0371 | Solanum lycopersicum | Heinz 1706 | leaf | 974 | 293.51 |
Hits on known miRNAs
| hit miRNA | alignment |
|---|---|
| ahy-miR159 | TTTGGATTGAAGGGAGCTCTA ||||||||||||||||||||| TTTGGATTGAAGGGAGCTCTA |
| aly-miR159a-3p | TTTGGATTGAAGGGAGCTCTA ||||||||||||||||||||| TTTGGATTGAAGGGAGCTCTA |
| ath-miR159a | TTTGGATTGAAGGGAGCTCTA ||||||||||||||||||||| TTTGGATTGAAGGGAGCTCTA |
| bna-miR159 | TTTGGATTGAAGGGAGCTCTA ||||||||||||||||||||| TTTGGATTGAAGGGAGCTCTA |
| bra-miR159a | TTTGGATTGAAGGGAGCTCTA ||||||||||||||||||||| TTTGGATTGAAGGGAGCTCTA |
| cme-miR159a | TTTGGATTGAAGGGAGCTCTA ||||||||||||||||||||| TTTGGATTGAAGGGAGCTCTA |
| csi-miR159 | TTTGGATTGAAGGGAGCTCTA ||||||||||||||||||||| TTTGGATTGAAGGGAGCTCTA |
| gma-miR159a-3p | TTTGGATTGAAGGGAGCTCTA ||||||||||||||||||||| TTTGGATTGAAGGGAGCTCTA |
| gma-miR159e-3p | TTTGGATTGAAGGGAGCTCTA ||||||||||||||||||||| TTTGGATTGAAGGGAGCTCTA |
| hbr-miR159a | TTTGGATTGAAGGGAGCTCTA ||||||||||||||||||||| TTTGGATTGAAGGGAGCTCTA |
| htu-miR159a | TTTGGATTGAAGGGAGCTCTA ||||||||||||||||||||| TTTGGATTGAAGGGAGCTCTA |
| mes-miR159 | TTTGGATTGAAGGGAGCTCTA ||||||||||||||||||||| TTTGGATTGAAGGGAGCTCTA |
| mtr-miR159a | TTTGGATTGAAGGGAGCTCTA ||||||||||||||||||||| TTTGGATTGAAGGGAGCTCTA |
| nta-miR159 | TTTGGATTGAAGGGAGCTCTA ||||||||||||||||||||| TTTGGATTGAAGGGAGCTCTA |
| ptc-miR159a | TTTGGATTGAAGGGAGCTCTA ||||||||||||||||||||| TTTGGATTGAAGGGAGCTCTA |
| ptc-miR159b | TTTGGATTGAAGGGAGCTCTA ||||||||||||||||||||| TTTGGATTGAAGGGAGCTCTA |
| ptc-miR159c | TTTGGATTGAAGGGAGCTCTA ||||||||||||||||||||| TTTGGATTGAAGGGAGCTCTA |
| pvu-miR159a.1 | TTTGGATTGAAGGGAGCTCTA ||||||||||||||||||||| TTTGGATTGAAGGGAGCTCTA |
| rco-miR159 | TTTGGATTGAAGGGAGCTCTA ||||||||||||||||||||| TTTGGATTGAAGGGAGCTCTA |
| sly-miR159 | TTTGGATTGAAGGGAGCTCTA ||||||||||||||||||||| TTTGGATTGAAGGGAGCTCTA |
| vvi-miR159c | TTTGGATTGAAGGGAGCTCTA ||||||||||||||||||||| TTTGGATTGAAGGGAGCTCTA |
Precursor of miRNA M00019
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch03 | 61786065 | 61786242 | + | UGGAGCUCCUUGAAGUCCAA CAGAAGAUCUAACAGGUUAG AUUGAGCUGCUGACCUAUGG AUUCCUCAGCCCUAUCUAUU UAUGAUUUCAAACAUAUAGA UAGGUUUGUGGGUUUGCAUA UGUCAGGAGCUUUAUUUUAC CCUUUGUUUGAUCAUUUUUU GGAUUGAAGGGAGCUCUA |
-79.00 | NA | structure |
